PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy003552

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 349aa MW: 39414.5 Da PI: 4.9362

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S58460015	PU_ref	Unigene	View CDS
PUT-171a-Arachis_hypogaea-11141	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.6e-12	181	224	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Ahy003552 181 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 224 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-15	177	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	181	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-12	181	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.14E-4	182	229	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-14	182	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00315	275	316	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MELSQLGFLE ELLLLAPRRV EETCWNNGFN DLLPTTPPPS ASVSASWSFD SLDDNPSLNP 60 SFSSFSTPLD HRFDSSYAAS FPFLDAFTIP PELHHSPPPL LPQQEHNHNN HHPLVEEEEE 120 ELGFLGNDDN NQSLEERNSG RCKVEEQQAL EVPAVVFNMG MCGEKKVPKS KKLEGQPSKN 180 LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY MKELLERIAK LQEETMEEEG 240 KNQIHLLGIS KELKPNEVMF RNSPKFDVER RDHDTRISIC CATKPGLLLS TVNTLEALGL 300 EIHQCVISGF NDFSMQASCS EVAEERNCIS TEDVKQALFK NAGYGGRCV

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MELSQLGFLE ELLLLAPRRV EETCWNNGFN DLLPTTPPPS ASVSASWSFD SLDDNPSLNP  60
SFSSFSTPLD HRFDSSYAAS FPFLDAFTIP PELHHSPPPL LPQQEHNHNN HHPLVEEEEE  120
ELGFLGNDDN NQSLEERNSG RCKVEEQQAL EVPAVVFNMG MCGEKKVPKS KKLEGQPSKN  180
LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY MKELLERIAK LQEETMEEEG  240
KNQIHLLGIS KELKPNEVMF RNSPKFDVER RDHDTRISIC CATKPGLLLS TVNTLEALGL  300
EIHQCVISGF NDFSMQASCS EVAEERNCIS TEDVKQALFK NAGYGGRCV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	190	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015963319.1	0.0	transcription factor bHLH93
Refseq	XP_025651147.1	0.0	transcription factor bHLH93-like
Refseq	XP_025697802.1	0.0	transcription factor bHLH93-like
Swissprot	Q9LSL1	1e-86	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A444WVR9	0.0	A0A444WVR9_ARAHY; Uncharacterized protein
STRING	GLYMA01G02390.1	1e-154	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-88	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]