PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy002804

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NF-YB

Protein Properties

Length: 157aa MW: 17438.7 Da PI: 4.3198

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S58464712	PU_ref	Unigene	View CDS
PUT-171a-Arachis_hypogaea-22854	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	76.2	5e-24	11	94	3	86
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c re+++ti+++ +l al lGf +y+e++ + Ahy002804 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSREEKRTIAPEHVLKALEVLGFGEYIEEVYAA 94 6899***************************************************************************98654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.6E-39	8	141	IPR009072	Histone-fold
SuperFamily	SSF47113	1.68E-35	12	144	IPR009072	Histone-fold
Pfam	PF00808	1.5E-21	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE 60 VCSREEKRTI APEHVLKALE VLGFGEYIEE VYAAYEQHKL ETMQDSLKGG GKWSNGAEMT 120 EEEALAEQQR MFAEARARMN GGAIASKQPE ADQSLDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	1e-34	12	136	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015944068.1	1e-113	protein Dr1 homolog isoform X1
Refseq	XP_016194036.1	1e-113	protein Dr1 homolog isoform X1
Refseq	XP_025616651.1	1e-113	protein Dr1 homolog isoform X1
Refseq	XP_025629546.1	1e-113	protein Dr1 homolog isoform X1
Swissprot	P49592	1e-90	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	I1K186	1e-109	I1K186_SOYBN; Uncharacterized protein
STRING	GLYMA05G07750.1	1e-110	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	6e-93	nuclear factor Y, subunit B13

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]