PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy000551
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 394aa    MW: 44984.9 Da    PI: 9.4708
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58459416PU_unrefUnigeneView CDS
PUT-171a-Arachis_hypogaea-23044PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.7e-14993495
               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
               v ++  +l+s++l++p +f++++gg+   s  + l  ++g sW+v l  +k ++++++ +GW eFv+   + +g  + F+++g+s+f+   +
  Ahy000551  9 VILT-TTLQSKQLRVPDNFLRKYGGE--LSSFVNLSVPDGSSWRVGL--KKVDNKFWFIDGWAEFVQRYSIGVGYLLAFRYEGKSNFSA--H 93
               4444.4456667***********988..6778***************..*********************************9998844..3 PP
2B362.19.4e-20265356499
                E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                vl ps+  + ++++lp  fae++ +g++     ++l++++gr+W v++ yr   gr  l++GW eF+ +n+L egD++vF+l + +e  l v++fr 
  Ahy000551 265 VLRPSYLYRGCIMYLPSCFAEKYlNGVSG---FIKLQHPDGRQWPVRCLYRT--GRAKLSQGWFEFAIDNNLGEGDVCVFELLRMKEVVLQVTIFRV 356
                78899******************877744...5***************5555..5567***********************9988999999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-21396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-20396IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-15496No hitNo description
PROSITE profilePS5086312.21598IPR003340B3 DNA binding domain
SMARTSM010196.5E-12698IPR003340B3 DNA binding domain
PfamPF023621.0E-111494IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-26254355IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-26255356IPR015300DNA-binding pseudobarrel domain
CDDcd100175.58E-25260355No hitNo description
SMARTSM010193.5E-20262357IPR003340B3 DNA binding domain
PROSITE profilePS5086314.452262357IPR003340B3 DNA binding domain
PfamPF023627.4E-18265355IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MPRPSFHKVI LTTTLQSKQL RVPDNFLRKY GGELSSFVNL SVPDGSSWRV GLKKVDNKFW  60
FIDGWAEFVQ RYSIGVGYLL AFRYEGKSNF SAHIFNLATA EINYQSPTRS SNEGSYFANR  120
LKIFEEMEDE DFTESKPALQ NLFNGSKLNS VNWGEXVGNA LPAKSARDIG LQFNAIEFKK  180
STDELKLRAS FEEKAKKTAR KKRKSEPGSA EGQEASDGQE EEREMRIRFY ESASARKRTV  240
TAEEREKAVN EAKAFEPSNP FCRVVLRPSY LYRGCIMYLP SCFAEKYLNG VSGFIKLQHP  300
DGRQWPVRCL YRTGRAKLSQ GWFEFAIDNN LGEGDVCVFE LLRMKEVVLQ VTIFRVTDEA  360
EFLSPPPLLL TQNVNQAKLL RSPMQQHHLT SPKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-6922835815144B3 domain-containing transcription factor VRN1
4i1k_B3e-6922835815144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025642219.10.0B3 domain-containing transcription factor VRN1 isoform X1
SwissprotQ8L3W11e-127VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A445A9940.0A0A445A994_ARAHY; Uncharacterized protein
STRINGXP_007131905.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-125B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]