PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Ahy000194 | ||||||||||||||||
Common Name | LEC1 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NF-YB | ||||||||||||||||
Protein Properties | Length: 226aa MW: 25437.3 Da PI: 6.584 | ||||||||||||||||
Description | NF-YB family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 175.4 | 5.5e-55 | 52 | 148 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yreleg++ Ahy000194 52 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDR 148 69*********************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.1E-51 | 47 | 154 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.06E-38 | 55 | 154 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.7E-26 | 58 | 122 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.6E-17 | 86 | 104 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 89 | 105 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 7.6E-17 | 105 | 123 | No hit | No description |
PRINTS | PR00615 | 7.6E-17 | 124 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
METGGGFHGY HNLPTTTSGL KLSVSEMNMR AVENNNTGSN NNTHTDDNEC TVREQDRFMP 60 IANVIRIMRK ILPPHAKISD DAKETIQECV SEYISFITGE ANERCQREQR KTITAEDVLW 120 AMSKLGFDDY IEPLTMYLHR YRELEGDRTS MRGEPLGKRT VDYGTLGVAA TSAFVPQFHI 180 GHHHHHPRPS GYYGTPMGNY IRDASNAGSS LQPPSLAYAE PNTQYK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 9e-63 | 51 | 143 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016195843.1 | 1e-172 | nuclear transcription factor Y subunit B-3-like | ||||
Refseq | XP_025629766.1 | 1e-172 | nuclear transcription factor Y subunit B-3 | ||||
Swissprot | Q84W66 | 8e-72 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A0C5K1J5 | 1e-171 | A0A0C5K1J5_ARAHY; Leafy cotyledon 1-A | ||||
STRING | GLYMA17G00950.1 | 1e-107 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.1 | 3e-70 | nuclear factor Y, subunit B6 |