PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022783-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 254aa    MW: 29858.4 Da    PI: 9.2745
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022783-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.94.5e-07327123
                     EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                     ++Cp  dC+ s++rk++L+rH+  H
  AHYPO_022783-RA  3 FSCPvnDCNASYRRKDHLNRHMLQH 27
                     89********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.24E-6129No hitNo description
Gene3DG3DSA:3.30.160.603.4E-9129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.408332IPR007087Zinc finger, C2H2
SMARTSM003551.8E-4327IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280527IPR007087Zinc finger, C2H2
SMARTSM00355186691IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806891IPR007087Zinc finger, C2H2
SMARTSM0035515094115IPR015880Zinc finger, C2H2-like
SMARTSM0035596123158IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-5147187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.89E-5148188No hitNo description
SMARTSM0035512164190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
RPFSCPVNDC NASYRRKDHL NRHMLQHEGK ISRNLTARRD RTNMFVRKLG VERSSDMLLI  60
LKSSETFCAD PKCMMSFSNI KCLREHIRTF HQYVKCEVCR CKHLRKNYKL HLQTHEEHLP  120
TTIKCNFEGC DHSFTTVSSY NKLQLLKSNL QQHINAVHLK LRPFMCGIPG CGMTFAFKHV  180
RDNHEKTFRH VYVPGDLEEF DEQFRSRPRG GRKRKLPCIE MLMRKRIAPA NQCDSFLSES  240
SDFLSWLFSD DED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206214RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851708.11e-113transcription factor IIIA-like
SwissprotQ84MZ43e-56TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0K9R4E81e-110A0A0K9R4E8_SPIOL; Uncharacterized protein
STRINGXP_010673198.11e-106(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.14e-55transcription factor IIIA