PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_022716-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

FAR1

Protein Properties

Length: 430aa MW: 49684.9 Da PI: 9.6836

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_022716-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.8	2.1e-19	28	118	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY +YA+ +GF++r s+++k+ +g ++ + fvCs+eg +++ kk ++ +r +r+++r+gCka+l +k + + +++v k+e+ H+H l+ AHYPO_022716-RA 28 DFYTKYAEICGFDIRSSTTYKN--KGIVVLKYFVCSREGILKSKPKKseDVVARYKRSTKRIGCKARLILKYDIvKRTYYVLKFEEAHTHCLV 118 6***************9999..8999*******8777766644778899*************999*************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-16	28	118	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.334	226	266	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0015	241	268	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
VTVWIPHCDL DKKPIVGMTF ENLDKTLDFY TKYAEICGFD IRSSTTYKNK GIVVLKYFVC 60 SREGILKSKP KKSEDVVARY KRSTKRIGCK ARLILKYDIV KRTYYVLKFE EAHTHCLVSP 120 TSRQYLLGNR KMTLLHKNFI SKNARVNIGP RYKQDKLNAE SLHTNPQYKT PLPIEKHAGE 180 VYTRTIFFLF QYEVYKSCFK IYIQNIEKIE SVESISVLDS TVSKMYKVEL ILGSSIDELK 240 VDCDCKLYKR IGILCSHAIC VMSARQITQI PKQYILDRWT KIALKKPIFD LHGNVIEESK 300 KCDNMGKLLG QVWCEIFSCV GLAQRSESDL QSLLQNLKEI SRKLEESDDV RVEITKEQQI 360 ELLVGPGSSS TMEIQNPIQS KNKGKRQRII GEKELNIEQS KKPKRKCKTC GKFDYHDTRN 420 CPSTNDPSLK

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

VTVWIPHCDL DKKPIVGMTF ENLDKTLDFY TKYAEICGFD IRSSTTYKNK GIVVLKYFVC  60
SREGILKSKP KKSEDVVARY KRSTKRIGCK ARLILKYDIV KRTYYVLKFE EAHTHCLVSP  120
TSRQYLLGNR KMTLLHKNFI SKNARVNIGP RYKQDKLNAE SLHTNPQYKT PLPIEKHAGE  180
VYTRTIFFLF QYEVYKSCFK IYIQNIEKIE SVESISVLDS TVSKMYKVEL ILGSSIDELK  240
VDCDCKLYKR IGILCSHAIC VMSARQITQI PKQYILDRWT KIALKKPIFD LHGNVIEESK  300
KCDNMGKLLG QVWCEIFSCV GLAQRSESDL QSLLQNLKEI SRKLEESDDV RVEITKEQQI  360
ELLVGPGSSS TMEIQNPIQS KNKGKRQRII GEKELNIEQS KKPKRKCKTC GKFDYHDTRN  420
CPSTNDPSLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	382	387	KGKRQR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021861919.1	1e-107	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_021862991.1	1e-106	protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-15	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	AHYPO_022716-RA