PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_022687-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

FAR1

Protein Properties

Length: 508aa MW: 59704.6 Da PI: 8.7

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_022687-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43	1.5e-13	56	156	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 Y++YAk+ GF +++++s + n++ t++C ++g+++++ + +++ +r+++++gC ++ +++ d+ wev+k+ AHYPO_022687-RA 56 TYKKYAKQQGFGICRTASAFR-ANKQRRGVTWRCDCWGNPNTKALReyrivdqrmeigggLSQKIVSRKSKKCGCPVMVYAHLTGDNLWEVNKV 148 6*************98886.777799********99988899*****999999999************************ PP FAR1 82 eleH.nHe 88 +eH nH+ AHYPO_022687-RA 149 IHEHqNHN 156 **7775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-11	56	156	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.112	373	409	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MDEVKADEGD VMTTNKLSNN LCLSPMHINN VEANVLNIEP LEVGMKFQTW EEIEETYKKY 60 AKQQGFGICR TASAFRANKQ RRGVTWRCDC WGNPNTKALR EYRIVDQRME IGGGLSQKIV 120 SRKSKKCGCP VMVYAHLTGD NLWEVNKVIH EHQNHNPSPS KSKHIRQHRE EHFTKSIKRK 180 LISNYSAGEQ LKQVIYDSFT VEEFEQQWAY VIKTHNVESD KWLEELFKES RMWAPVHMRD 240 TFWAVMTTTQ RVESINAFFD GFLNSKTKLC EFVARYYSAI GKRVEDEKTA DALSAMRHRN 300 LSTGYVAEKY FRKIYTDFKF REVQIQCERV TYCNLREENM ISAIEVRHVI EDRFWVVPKG 360 TSKEVVTKHK RSYGITFNHQ SLVMDCDCKL FITHGIMCRH MIRLLDWYDI SIIPVMYVLK 420 RWRRDIRRKH TLVKVPYHDP FNTVEGMRHH KMHLAFEPIC DEADDGDDTV QLVIDALKEL 480 HMKLIQMRAI YHLQLLASTP QQPPCNH*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MDEVKADEGD VMTTNKLSNN LCLSPMHINN VEANVLNIEP LEVGMKFQTW EEIEETYKKY  60
AKQQGFGICR TASAFRANKQ RRGVTWRCDC WGNPNTKALR EYRIVDQRME IGGGLSQKIV  120
SRKSKKCGCP VMVYAHLTGD NLWEVNKVIH EHQNHNPSPS KSKHIRQHRE EHFTKSIKRK  180
LISNYSAGEQ LKQVIYDSFT VEEFEQQWAY VIKTHNVESD KWLEELFKES RMWAPVHMRD  240
TFWAVMTTTQ RVESINAFFD GFLNSKTKLC EFVARYYSAI GKRVEDEKTA DALSAMRHRN  300
LSTGYVAEKY FRKIYTDFKF REVQIQCERV TYCNLREENM ISAIEVRHVI EDRFWVVPKG  360
TSKEVVTKHK RSYGITFNHQ SLVMDCDCKL FITHGIMCRH MIRLLDWYDI SIIPVMYVLK  420
RWRRDIRRKH TLVKVPYHDP FNTVEGMRHH KMHLAFEPIC DEADDGDDTV QLVIDALKEL  480
HMKLIQMRAI YHLQLLASTP QQPPCNH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-34	far-red elongated hypocotyls 3

Link Out ? help Back to Top
Phytozome	AHYPO_022687-RA