PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_022540-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

GRAS

Protein Properties

Length: 527aa MW: 59404.7 Da PI: 6.8393

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_022540-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	348.8	8.4e-107	176	515	1	342
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av+s dl++a++ L++++ ++sp+gd++qRla+yf+++L+arla+++s+++ + + s ss+ l+a+++++ + P++++s AHYPO_022540-RA 176 LRTLLTHCAQAVASFDLRAANERLKQIRLHSSPYGDSIQRLAHYFANGLEARLAGTGSTVSGNIVDARMS---SSDFLKAYRVYVSTIPWHRMS 266 6789*************************************************999999877766666...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 +++aN+aI + +e+++r+Hi+Df++ GlQWp+L+q La+R++gpp+lRiTg++ p++g +e++e+tg+rLa ++e+++vpf++++ +a+++ AHYPO_022540-RA 267 YFLANNAIIKLAEKATRIHIVDFGVLLGLQWPCLIQNLAKRSNGPPRLRITGIDYPQQGfrPAERVEATGRRLAGYCERFNVPFQYQA-IANKW 359 ******************************************************9*************************.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 +++++e+++++ +E ++Vn++++ +llde+v+++s++d++L+l+k+l+P ++++ + +n++ F +rf eal ++s++fd +e++ pre++ AHYPO_022540-RA 360 DCIKPEDINIEDDELVIVNCMFRSGTLLDETVEVDSQKDAFLRLIKQLNPSLFIHGIVNGTYNAPFFITRFREALFHFSSVFDIFEETNPREEH 453 *********************************************************************************9999* PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 er +E el +re+ nv+acegaer++r et+++W++r +aGFk++pl+ + +ak++++ AHYPO_022540-RA 454 ERLLIESELNAREALNVIACEGAERIQRPETYKQWQARTVRAGFKQLPLDRNLLGKAKAMVE 515 ****************************************************99999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.52	150	526	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-104	176	515	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MKFLLLIESP DDNGVDGYFL SNTPSFESNW VQNQIQLEPV INLSDHSNSN SEVKSQSSGS 60 NNSDGCIDGL ATSTSSTLTS IAQAKVDNGV SQSRKKKNQR RDDGDNDGGR SNKQQASSNE 120 DYVEMRQYDD ILLCREDKYD LTNCDKEVNK KSQGKDTKSK TSRGKKQNNA VEEVDLRTLL 180 THCAQAVASF DLRAANERLK QIRLHSSPYG DSIQRLAHYF ANGLEARLAG TGSTVSGNIV 240 DARMSSSDFL KAYRVYVSTI PWHRMSYFLA NNAIIKLAEK ATRIHIVDFG VLLGLQWPCL 300 IQNLAKRSNG PPRLRITGID YPQQGFRPAE RVEATGRRLA GYCERFNVPF QYQAIANKWD 360 CIKPEDINIE DDELVIVNCM FRSGTLLDET VEVDSQKDAF LRLIKQLNPS LFIHGIVNGT 420 YNAPFFITRF REALFHFSSV FDIFEETNPR EEHERLLIES ELNAREALNV IACEGAERIQ 480 RPETYKQWQA RTVRAGFKQL PLDRNLLGKA KAMVEIDSYS ICFAHV*

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MKFLLLIESP DDNGVDGYFL SNTPSFESNW VQNQIQLEPV INLSDHSNSN SEVKSQSSGS  60
NNSDGCIDGL ATSTSSTLTS IAQAKVDNGV SQSRKKKNQR RDDGDNDGGR SNKQQASSNE  120
DYVEMRQYDD ILLCREDKYD LTNCDKEVNK KSQGKDTKSK TSRGKKQNNA VEEVDLRTLL  180
THCAQAVASF DLRAANERLK QIRLHSSPYG DSIQRLAHYF ANGLEARLAG TGSTVSGNIV  240
DARMSSSDFL KAYRVYVSTI PWHRMSYFLA NNAIIKLAEK ATRIHIVDFG VLLGLQWPCL  300
IQNLAKRSNG PPRLRITGID YPQQGFRPAE RVEATGRRLA GYCERFNVPF QYQAIANKWD  360
CIKPEDINIE DDELVIVNCM FRSGTLLDET VEVDSQKDAF LRLIKQLNPS LFIHGIVNGT  420
YNAPFFITRF REALFHFSSV FDIFEETNPR EEHERLLIES ELNAREALNV IACEGAERIQ  480
RPETYKQWQA RTVRAGFKQL PLDRNLLGKA KAMVEIDSYS ICFAHV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-46	176	502	5	328	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019106559.1	0.0	PREDICTED: scarecrow-like protein 34
Swissprot	O80933	1e-141	SCL9_ARATH; Scarecrow-like protein 9
Swissprot	Q9XE58	1e-141	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A0K9QAZ3	0.0	A0A0K9QAZ3_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010685731.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-141	GRAS family protein

Link Out ? help Back to Top
Phytozome	AHYPO_022540-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]