PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_022398-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 323aa MW: 35584.4 Da PI: 7.7041

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_022398-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6e-39	38	95	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 lkcprCds+ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk kk+ AHYPO_022398-RA 38 PPLKCPRCDSSNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKTKKH 95 5689**************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	29.413	40	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.8E-33	40	94	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-25	41	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010052	Biological Process	guard cell differentiation
GO:0010118	Biological Process	stomatal movement
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1902066	Biological Process	regulation of cell wall pectin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MMSSENIPPV AHPPENHHTT HRKSTSQKTQ EQPLPQPPPL KCPRCDSSNT KFCYYNNYSL 60 TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KTKKHKPTSS SSSSITRLDI SGGPGTVSDF 120 KFLAQPNVTP AMEFQLGGLA LPRLHPATAG VYTQFITSSG TQTHSVGLGS GSGGCFGLDL 180 LGLGNYPPIP TSSNDHNISI SSIESLSSIN QEMHWKLQQQ RLGLLYGPTT IEDDHNNQEK 240 AIGEGEGMDL FKNLENARKI DHNQVSGDHN TPNNNPTEWL FEQIPVNYGS SDKNNNNHED 300 FNGVWATELH SHHHQHQFNG LQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021728304.1	1e-123	dof zinc finger protein DOF5.7-like
STRING	XP_010680376.1	1e-119	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	3e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	AHYPO_022398-RA