PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022202-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRAS
Protein Properties Length: 756aa    MW: 84742.3 Da    PI: 5.2295
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022202-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.92.5e-1083817521373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL+ cA+  +s+d + a++lL++++e++s +gd  qRla+yf++AL+arla+++s++y al++++ts    ++ l+a+++f  ++P+ k+s
  AHYPO_022202-RA 381 LRTLLVLCAQSTASDDRRTADELLKQIRENSSAEGDGSQRLAHYFANALEARLAGTGSQIYTALKSKRTS---AADMLKAYQFFIRTCPLKKIS 471
                      5789*************************************************************99999...9******************** PP

             GRAS  95 hltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                         aN  I e ++ + +++H+iDf+i +G+QWpaL+q L+ R++gpp+l iTg++ p++g   +e++e+tg+rLak++e+++vpfe+++ va++
  AHYPO_022202-RA 472 IGFANYLITEKIAVKaSKLHVIDFGILYGFQWPALIQRLSLRAGGPPKLCITGIDLPQPGfrPAERVEATGRRLAKYCERFNVPFEYHA-VAQK 564
                      ***********9988799*****************************************9*****************************.7*** PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      +e++++e+L+++++ ++aVn+ ++ ++llde+  ++s+r++vL+lv++++P+++v+   + ++n++ F++rf e l ++s+lfd+++++++r++
  AHYPO_022202-RA 565 WETITIEDLKIESDAVVAVNCLYRFKNLLDETIVTDSPRNAVLNLVRKIRPDIFVHGVVNGSYNAPFFVTRFREVLFHFSTLFDMFDTNASRDD 658
                      ********************************************************************************************** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       er + E+e+ grei+nvvaceg+er+er et+++W+ r ++aGF+++pl +++ +  ++ ++ ++ + + ++ +  +l++gWk+r   ++SaW
  AHYPO_022202-RA 659 PERLMFEKEIYGREIMNVVACEGTERVERPETYKQWQVRNNRAGFRQMPLVQDILDMLRCKVKAHYHRDFVIDVDGCWLLQGWKGRITHAISAW 752
                      ******************************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.289355733IPR005202Transcription factor GRAS
PfamPF035148.7E-106381752IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MGSQYGEFPE NFVNWHQTVN GVIMSPGYDE SLNYANLFNY KDSSQELTSL NIIEPSDNHI  60
QPNSSSFSGT SQGVELFDDS DSDGVLKYIS QILMEEDMEQ KTCMLHDALA LQAAEIPFYD  120
ALGKKYPTSP DQHPLIDHGF ESQNDHHWSS PSDSSGSTCS SSSNSINSVD PSTLVDLNDH  180
NKPFVSQSPR VGLYSHSSTL PELPFGSLNS VNESASNGSL MSSLNFPMGL DFFNEKESII  240
LFQKGMEEAS KFLPKNNNIV INLENLTFPN ETEDDTSAVA VKKEKGENSP DGSKESKIHY  300
REDEGFEEGR SSKQSAVFVE EAELSEMFDK VLLCSNATKG CFFKVNPDEC LNTGQSLGLE  360
GGGKGRPRKQ AQVNDKNMVD LRTLLVLCAQ STASDDRRTA DELLKQIREN SSAEGDGSQR  420
LAHYFANALE ARLAGTGSQI YTALKSKRTS AADMLKAYQF FIRTCPLKKI SIGFANYLIT  480
EKIAVKASKL HVIDFGILYG FQWPALIQRL SLRAGGPPKL CITGIDLPQP GFRPAERVEA  540
TGRRLAKYCE RFNVPFEYHA VAQKWETITI EDLKIESDAV VAVNCLYRFK NLLDETIVTD  600
SPRNAVLNLV RKIRPDIFVH GVVNGSYNAP FFVTRFREVL FHFSTLFDMF DTNASRDDPE  660
RLMFEKEIYG REIMNVVACE GTERVERPET YKQWQVRNNR AGFRQMPLVQ DILDMLRCKV  720
KAHYHRDFVI DVDGCWLLQG WKGRITHAIS AWVPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-483857528374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685736.10.0PREDICTED: scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0K9RLR30.0A0A0K9RLR3_SPIOL; Uncharacterized protein
STRINGXP_010685736.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]