PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022096-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 80aa    MW: 9154.66 Da    PI: 9.6843
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022096-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.54.9e-131741694
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                     + lp kf++e++ k e+s  + + de+g +W+++l  +k+++++ ++  W++  + ng ++g  +vF+l+++ ++ +v+
  AHYPO_022096-RA  1 MNLPSKFCKENDVK-ENSSGVLMIDERGDTWKLTL--KKHGRKICIG-KWRHLHRHNGYEVGNLLVFELISS-GELPVM 74
                     569********755.55669***************..9999999888.8*******************9984.433555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-11175IPR015300DNA-binding pseudobarrel domain
CDDcd100178.07E-9177No hitNo description
SuperFamilySSF1019362.94E-11177IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.294179IPR003340B3 DNA binding domain
PfamPF023621.2E-9275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MNLPSKFCKE NDVKENSSGV LMIDERGDTW KLTLKKHGRK ICIGKWRHLH RHNGYEVGNL  60
LVFELISSGE LPVMKLYTN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672239.25e-22PREDICTED: B3 domain-containing protein REM9-like
STRINGXP_010672239.12e-22(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.15e-10B3 family protein