PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_021953-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

M-type_MADS

Protein Properties

Length: 183aa MW: 21004.3 Da PI: 9.621

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_021953-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.7	2.4e-16	10	52	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 ++enk+ r t+ +R + +lKK +ELSvLC+++v++i+f + + AHYPO_021953-RA 10 FVENKTSRRKTYKRRVKSLLKKCHELSVLCNIDVCLIVFDPYN 52 78************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.554	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.6E-16	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-9	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.48E-16	4	72	No hit	No description
SuperFamily	SSF55455	4.84E-20	4	96	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-15	11	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MASQKVTLSF VENKTSRRKT YKRRVKSLLK KCHELSVLCN IDVCLIVFDP YNETLITSPS 60 SVSEVKTLIS KFKSYSESGL YEQRHDQKTF LQQSLKKLKI KLMKVQQKNR DMEIENVVSD 120 LLSGKPIEQV SHKDFDDLLS MIDSKMKCIQ HQLKNLNVDI DNNNPPQNLN VNNIVDPSFL 180 SN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	6e-17	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	AHYPO_021953-RA