PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021924-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family DBB
Protein Properties Length: 318aa    MW: 34344.3 Da    PI: 5.1803
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021924-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.15.7e-06447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e  e+   C  ++  lC+dC ++ H        H++v+l
  AHYPO_021924-RA  4 QCNVCETAEAVVLCCADEAALCHDCDEKVHAAnklaskHQRVSL 47
                     7******99*********************66889999998875 PP
2zf-B_box279.3e-095494337
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     ++kC+ +++    +fC +++ llC++C +++H        H
  AHYPO_021924-RA 54 MPKCDICQDTVGYFFCLEDRALLCRKCDVAIHTAnsfvsgH 94
                     799******99*********************545555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000211.31E-7347No hitNo description
SMARTSM003363.2E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.0725299IPR000315B-box-type zinc finger
SMARTSM003362.0E-165299IPR000315B-box-type zinc finger
PfamPF006435.8E-75495IPR000315B-box-type zinc finger
CDDcd000212.32E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MKIQCNVCET AEAVVLCCAD EAALCHDCDE KVHAANKLAS KHQRVSLSHS SSHMPKCDIC  60
QDTVGYFFCL EDRALLCRKC DVAIHTANSF VSGHQRFLLT GVSVGLEPAE PGSSSSGGKS  120
NSGEKVCDAE NRATLKRSAP TSTTSQNSKS GSVQRGVEPV MPSKRSTPKT VACEYPKFQP  180
VQSGALEDIT QSKITIAGGS ATGALSQWQM DDFFGLNDFQ LNYGFPENVS SKADSGKLGD  240
SDSSSILRSF DDDLDSDDRL GQVPDVSWTV QQELSPPTAS GLFWPKSSQQ FMDNAVFVPD  300
ISWSEVPMHQ QYLPKRQ*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021736205.11e-178B-box zinc finger protein 22-like
SwissprotQ9SYM24e-79BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0K9R0T51e-175A0A0K9R0T5_SPIOL; Uncharacterized protein
STRINGXP_010675280.11e-175(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.17e-74light-regulated zinc finger protein 1