PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_021867-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | LBD | ||||||||
Protein Properties | Length: 150aa MW: 16534.7 Da PI: 7.4798 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.1 | 2.2e-31 | 4 | 100 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPv + + + +q+q+ +++ AHYPO_021867-RA 4 PCGACKFLRRKCTSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPMNRRHDAVLTISYEAQARLSDPVASIQAELAMVQNQVISSRMA 97 7***********************9989***********************************************************9888776 PP DUF260 94 lal 96 +a AHYPO_021867-RA 98 IAN 100 654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.24 | 3 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-30 | 4 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
AIAPCGACKF LRRKCTSGCI FAPHFGSDQG AARFAAVHKV FGASNVSKLL LHIPMNRRHD 60 AVLTISYEAQ ARLSDPVASI QAELAMVQNQ VISSRMAIAN ALQNSQQQQQ ISNHGYDVVM 120 HHPQHHHPHH DDDDDDITPT HIAFANHLLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-30 | 1 | 91 | 8 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-30 | 1 | 91 | 8 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021755963.1 | 1e-64 | LOB domain-containing protein 20-like | ||||
Swissprot | Q9SRV3 | 5e-54 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A2C9VIZ1 | 8e-60 | A0A2C9VIZ1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028764m | 1e-60 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 4e-54 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_021867-RA |