PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_021633-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

HD-ZIP

Protein Properties

Length: 837aa MW: 90827.8 Da PI: 6.2145

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_021633-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.7	3e-21	139	194	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+kkl L++rqVk+WFqNrR+++k AHYPO_021633-RA 139 KKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSKKLCLETRQVKFWFQNRRTQMK 194 688999***********************************************999 PP
2	START	193	1.4e-60	349	574	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 ela+ a++elvk+a+++ep+W +s e +n de++++f + + + +ea r++g+v+ ++ lve+++d + +W e+++ +a+ AHYPO_021633-RA 349 ELALGAMDELVKLAQSDEPLWLRSMdsggrEVLNHDEYMRSFNPIIGmkpngFVSEATRETGMVIINSLALVETIMDAN-RWAEMFPgmiaRAT 441 57899**********************99*******9977799999***********************.********** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 t++vissg galqlm elq+lsplvp R + f+R+++q+ +g+w++vdvS+d ++ + s+ +v +++lpSg+++++++ng+skvtwv AHYPO_021633-RA 442 TTDVISSGmggtrnGALQLMHCELQVLSPLVPvRVVNFLRFCKQHAEGVWAVVDVSIDCIRESSISPTYVNCRRLPSGCVVQDMPNGYSKVTWV 535 **********************************************************999************************* PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 eh +++++++h+l+r+lv+sgl +ga++w tlqrqce+ AHYPO_021633-RA 536 EHSEYEESSIHQLYRPLVSSGLGFGAQRWITTLQRQCEC 574 ***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.24E-20	124	196	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.232	136	196	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.1E-22	136	204	IPR009057	Homeodomain-like
SMART	SM00389	1.7E-18	137	200	IPR001356	Homeobox domain
CDD	cd00086	3.78E-19	138	196	No hit	No description
Pfam	PF00046	9.3E-19	139	194	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	171	194	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.593	340	577	IPR002913	START domain
SuperFamily	SSF55961	9.89E-34	342	574	No hit	No description
CDD	cd08875	9.87E-122	344	573	No hit	No description
SMART	SM00234	5.4E-43	349	574	IPR002913	START domain
Pfam	PF01852	3.9E-52	350	574	IPR002913	START domain
SuperFamily	SSF55961	1.43E-24	602	829	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009827	Biological Process	plant-type cell wall modification
GO:0042335	Biological Process	cuticle development
GO:0043481	Biological Process	anthocyanin accumulation in tissues in response to UV light
GO:0048765	Biological Process	root hair cell differentiation
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence Send to blast
MNFGGFLDSS GGTGSEGGGG GGGARLVTDI PYNNHNMPPG AISPHQQQQQ RLVGPTSMNN 60 KSFFNTPGLS LALQTGMEGH GEVTRVTDQN YEANGNGGGT TIGARRSRDN EEHESRSGSD 120 NLDGASGDEQ DASDLPPRKK RYHRHTPQQI QELEAVFKEC PHPDEKQRLE LSKKLCLETR 180 QVKFWFQNRR TQMKTQLERH ENSILRQEND KLRAENMSIR EALRNPICNN CGGPAMIGDI 240 SMEEQHLRIE NGRLKEELDR VCALASKFIG RPVSSLSGLS APPMPSSSLE LAVGTNGFGP 300 LNTVTTSSLP LAPDFGSGIS NALPVVSPTK STANVSGIER SFERSMYLEL ALGAMDELVK 360 LAQSDEPLWL RSMDSGGREV LNHDEYMRSF NPIIGMKPNG FVSEATRETG MVIINSLALV 420 ETIMDANRWA EMFPGMIARA TTTDVISSGM GGTRNGALQL MHCELQVLSP LVPVRVVNFL 480 RFCKQHAEGV WAVVDVSIDC IRESSISPTY VNCRRLPSGC VVQDMPNGYS KVTWVEHSEY 540 EESSIHQLYR PLVSSGLGFG AQRWITTLQR QCECLAILMS ANIPSGDHNA ITAGGRRSML 600 KLAQRMTNNF CAGVCASTVH KWNKLNMGNI DEDVRVMTRK SMDDPGEPSG IVLSAATSVW 660 LPVTPQRLFD FLRDERLRSE WDILSNGGPM QEMAHIAKGH DQGNCVSLLR AGAVNPNQSS 720 MLILQETCTD ASGSLVVYAP VDIPAMHVVM NGGDSAYVAL LPSGFAIVPD GSGSRGPNIS 780 MDATPQRVGG SLLTVAFQIL VNSLPTAKLT VESVETVSNL ISCTVQKIKA ALNCES*

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence Send to blast

MNFGGFLDSS GGTGSEGGGG GGGARLVTDI PYNNHNMPPG AISPHQQQQQ RLVGPTSMNN  60
KSFFNTPGLS LALQTGMEGH GEVTRVTDQN YEANGNGGGT TIGARRSRDN EEHESRSGSD  120
NLDGASGDEQ DASDLPPRKK RYHRHTPQQI QELEAVFKEC PHPDEKQRLE LSKKLCLETR  180
QVKFWFQNRR TQMKTQLERH ENSILRQEND KLRAENMSIR EALRNPICNN CGGPAMIGDI  240
SMEEQHLRIE NGRLKEELDR VCALASKFIG RPVSSLSGLS APPMPSSSLE LAVGTNGFGP  300
LNTVTTSSLP LAPDFGSGIS NALPVVSPTK STANVSGIER SFERSMYLEL ALGAMDELVK  360
LAQSDEPLWL RSMDSGGREV LNHDEYMRSF NPIIGMKPNG FVSEATRETG MVIINSLALV  420
ETIMDANRWA EMFPGMIARA TTTDVISSGM GGTRNGALQL MHCELQVLSP LVPVRVVNFL  480
RFCKQHAEGV WAVVDVSIDC IRESSISPTY VNCRRLPSGC VVQDMPNGYS KVTWVEHSEY  540
EESSIHQLYR PLVSSGLGFG AQRWITTLQR QCECLAILMS ANIPSGDHNA ITAGGRRSML  600
KLAQRMTNNF CAGVCASTVH KWNKLNMGNI DEDVRVMTRK SMDDPGEPSG IVLSAATSVW  660
LPVTPQRLFD FLRDERLRSE WDILSNGGPM QEMAHIAKGH DQGNCVSLLR AGAVNPNQSS  720
MLILQETCTD ASGSLVVYAP VDIPAMHVVM NGGDSAYVAL LPSGFAIVPD GSGSRGPNIS  780
MDATPQRVGG SLLTVAFQIL VNSLPTAKLT VESVETVSNL ISCTVQKIKA ALNCES*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00421	DAP	Transfer from AT4G00730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849370.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A0K9QLI3	0.0	A0A0K9QLI3_SPIOL; Uncharacterized protein
STRING	XP_010671720.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_021633-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]