PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021569-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 370aa    MW: 41779.6 Da    PI: 6.8076
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021569-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.2e-06199218120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C+k+F+r  nL+ H+
  AHYPO_021569-RA 199 FSCPLCSKTFNRYNNLQMHM 218
                      89*****************9 PP
2zf-C2H214.97.5e-05283305123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk F  k + ++H +++
  AHYPO_021569-RA 283 FMCRKCGKAFAVKGDWRTHEKNC 305
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-5192221No hitNo description
SMARTSM003550.049199221IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-5199218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.783199226IPR007087Zinc finger, C2H2
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-6267303No hitNo description
Gene3DG3DSA:3.30.160.603.5E-6279303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035550283303IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787283303IPR007087Zinc finger, C2H2
SMARTSM00355160309332IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSDPAYCNTN IFTKWFNFIP LHHPTTHTNT TPAPPPAHPA PAPPCNDITS HGGSGFDLNI  60
NSCWSTSNDV HDKFHPFSFP DSPALVKEKE ALPLLNTLIR EGKEHHLDEE EDDEDDEDET  120
MMMMIASDAD PDPKQNHAVV NPNSDAEQEH HGDRMRRRRQ QQQQQQQEQE IPIQGSSSSS  180
SLQYWIPTPA QILIGPTQFS CPLCSKTFNR YNNLQMHMWG HGSQYRRGPE SLKGSQPTPM  240
LRLPCYCCAA DCKHNIEHPR ARPLKDFRTL QTHYKRKHGV KPFMCRKCGK AFAVKGDWRT  300
HEKNCGRVWY CVCGSDFKHK RSLKDHIKAF GHGHVAFGAH FTAHADADAA LQDDCSLDEP  360
QPSDGDSNL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695319.11e-132PREDICTED: zinc finger protein WIP5-like isoform X3
TrEMBLA0A0K9R1Q01e-117A0A0K9R1Q0_SPIOL; Uncharacterized protein
STRINGXP_010695304.11e-129(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-101C2H2 family protein