PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_021534-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

TCP

Protein Properties

Length: 300aa MW: 31819.4 Da PI: 10.0098

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_021534-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.4	1.3e-38	48	140	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...k 89 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s ss+++ ++g + AHYPO_021534-RA 48 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPHSLSSQHHLRTAGlldS 140 789****************************************************************99888545555555444222225541 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	54	108	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.7E-34	54	246	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSATDGTTPN GGGVVVTGLL EQPQQQQRQS PATTTALTTT STTTTALAVK KPPAKDRHSK 60 VDGRGRRIRM PIICAARVFQ LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST 120 SSPHSLSSQH HLRTAGLLDS KPSQSLLPSP TPFLLGKRLR TTAEENEQNG VEKVDVVTTA 180 TIGPTAGYWA IPARPDFWSF GPEMVVGPTS SLSQQAAAIA AGRFLTTHHQ QQEQQQQQQQ 240 QQQQQQQQIG VLGEGSRVGN YLPIHQGHHL NLLASLSGAP ATGTGAGGPS DGRRDDDPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021750556.1	1e-117	transcription factor TCP7-like
Swissprot	Q9FMX2	1e-68	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0K9R6R1	1e-113	A0A0K9R6R1_SPIOL; Uncharacterized protein
STRING	XP_010688658.1	4e-93	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-48	TCP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_021534-RA