PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_021390-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

LBD

Protein Properties

Length: 122aa MW: 13391 Da PI: 7.8125

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_021390-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	109.2	3e-34	26	115	1	89
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+ rrkC ++Cv+apyf +eq +++f++vhk+FGasnv++ll+++p ++r da+ sl+yeA r+rdPv G+v+ i++lq ql+ AHYPO_021390-RA 26 PCGACKYRRRKCDEGCVFAPYFDSEQgTAQFEAVHKVFGASNVSRLLHSIPVHRRLDAVVSLCYEALSRVRDPVFGCVADITTLQLQLML 115 7*********************9989*******************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.516	25	121	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.4E-34	26	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MSNNNNNNNN NEWQGEGGNN NNGGGPCGAC KYRRRKCDEG CVFAPYFDSE QGTAQFEAVH 60 KVFGASNVSR LLHSIPVHRR LDAVVSLCYE ALSRVRDPVF GCVADITTLQ LQLMLHIKNY 120 G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-34	19	113	4	97	LOB family transfactor Ramosa2.1
5ly0_B	3e-34	19	113	4	97	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692268.1	8e-51	PREDICTED: LOB domain-containing protein 19
Swissprot	O81322	2e-42	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A438IWC3	3e-48	A0A438IWC3_VITVI; LOB domain-containing protein 31
STRING	XP_010692268.1	3e-50	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	2e-41	LBD family protein

Link Out ? help Back to Top
Phytozome	AHYPO_021390-RA