PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_021336-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | TALE | ||||||||
Protein Properties | Length: 290aa MW: 32959.2 Da PI: 6.3528 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 9.1e-08 | 238 | 271 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + AHYPO_021336-RA 238 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 271 469*****************************87 PP | |||||||
2 | ELK | 25.9 | 2.3e-09 | 192 | 213 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ AHYPO_021336-RA 192 ELKVELKQGFKSRIEDVREEIL 213 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.6E-20 | 25 | 69 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.3E-18 | 26 | 68 | IPR005540 | KNOX1 |
SMART | SM01256 | 7.2E-22 | 80 | 135 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.5E-16 | 83 | 134 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.184 | 192 | 212 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.629 | 212 | 275 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-11 | 214 | 279 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.59E-16 | 214 | 280 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.39E-11 | 215 | 276 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 219 | 278 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.6E-18 | 232 | 271 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MQEQGLGMLG GGLMGGEMGF NDEQRQIKAE IATHPLYEQL LAAHVSCLKV ATPIDQLPLI 60 DAQLSQSHNL LRSYASQHNN SLSPHERQEL DSLLAQYLLV LCSFRDQLQQ HVRVHAVEAV 120 MACREIEQNL QNLTGATLVE GTGATMSDDE DDMPLDYSLD QSSVVDPNDM MGFGSFIPTE 180 AERSLMERVR HELKVELKQG FKSRIEDVRE EILRKRRAGK LPGDTTSVLK AWWQQHSKWP 240 YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHNNSQSS NTLKSKRKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 268 | 288 | RKRNWHNNSQSSNTLKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021735936.1 | 0.0 | homeobox protein HD1-like | ||||
Swissprot | Q9FPQ8 | 1e-159 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A0K9RVV3 | 1e-178 | A0A0K9RVV3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010676578.1 | 1e-172 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-158 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_021336-RA |
Publications ? help Back to Top | |||
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