PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021319-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRAS
Protein Properties Length: 676aa    MW: 76760.1 Da    PI: 4.8791
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021319-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.47e-1083026731374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+++L++cA+av s d++ a++lL++++ ++sp+gd++qRla++++++L+arla+++s++++ ++  + s   ss+ l+a+k ++ + P+ ++ 
  AHYPO_021319-RA 302 LRSVLIQCAQAVMSFDQRTANELLKQIRLHSSPYGDSIQRLAHHVANGLEARLAGTGSTVSANISDMQIS---SSDFLKAYKRYVSAIPFKRMN 392
                      6789***************************************************999999999888888...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      + +aN aI++ +e+++++HiiDf++  GlQWp+L+q+L++R++gpp++RiTg++ p++g   +e++++tg+rLa ++++ gv+fe++  +a+++
  AHYPO_021319-RA 393 FYVANTAIYKLAEKATKIHIIDFGVFLGLQWPCLIQKLSKRENGPPKVRITGIDLPQHGfrPSERVNATGRRLAGYCQKYGVDFEYQG-IAEKW 485
                      **********************************************************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++e+++L+++++E+++Vn++ +  +l de+v+++s+rd++L+++++l+P+++++   +   +++ F +rf ea+ +ys++f+ ++a+lpr+ +
  AHYPO_021319-RA 486 ENIEPKDLKIESDEMVIVNCMCRSGTLADETVDTNSPRDAFLEMIRKLNPDLFIHGIVNGTFTAPFFINRFKEAMFHYSSIFEVFDATLPRHLH 579
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      er  +E e+ g+e++nvvacegaer++r et+++W+ r  +aG+++v l+ +++ +ak +++  + + + v+e+++++++gWk+r   ++S+W+
  AHYPO_021319-RA 580 ERLLIESEVYGKELTNVVACEGAERIQRPETYKQWQVRSARAGLRQVGLDREIVRKAKGMIKANYHEHFLVDEDRDWMLQGWKGRIFCALSFWQ 673
                      *****************************************************************999*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.44276653IPR005202Transcription factor GRAS
PfamPF035142.4E-105302673IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MNSVLVDSDF INNFFKFNTE FISNLPKNSP LGEFFQNPDF VDPQNLPFDE NESKINSEPT  60
NLIDLDALSL EQNESNNSSE APDFPDDCLK FISDILLEEN LDENPASAQE FQALQATEKS  120
LYDVIGESYP YPYPPSSDST LNQNPESPDA TSSTKSLSSL DSNLSFNQPE LDPFVNVDDF  180
VQSFLELNPQ PSFEDVEDGL VSDIAVTKLS SSPPSKKEKS IKGIRRKKSR QRDEGDEGGR  240
TRRNKIQAFS NEEYDEMDQY DDVLLCSEYN VNSCFSPPNK EGDRSRKSRG KKQNIKVDEV  300
DLRSVLIQCA QAVMSFDQRT ANELLKQIRL HSSPYGDSIQ RLAHHVANGL EARLAGTGST  360
VSANISDMQI SSSDFLKAYK RYVSAIPFKR MNFYVANTAI YKLAEKATKI HIIDFGVFLG  420
LQWPCLIQKL SKRENGPPKV RITGIDLPQH GFRPSERVNA TGRRLAGYCQ KYGVDFEYQG  480
IAEKWENIEP KDLKIESDEM VIVNCMCRSG TLADETVDTN SPRDAFLEMI RKLNPDLFIH  540
GIVNGTFTAP FFINRFKEAM FHYSSIFEVF DATLPRHLHE RLLIESEVYG KELTNVVACE  600
GAERIQRPET YKQWQVRSAR AGLRQVGLDR EIVRKAKGMI KANYHEHFLV DEDRDWMLQG  660
WKGRIFCALS FWQPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-463066738375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863662.10.0scarecrow-like protein 30
TrEMBLA0A0K9QTP60.0A0A0K9QTP6_SPIOL; Uncharacterized protein
STRINGXP_010685735.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-147SCARECROW-like 14