PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_021301-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 25341.6 Da PI: 6.3085 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5e-20 | 47 | 101 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ AHYPO_021301-RA 47 KKRKLSEEQVNMLEMSFGCEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 101 45689************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 121 | 6.3e-39 | 47 | 138 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv++LE+sF e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k++E++y++L+++ ++l+ en+rLe+ev +L+++l+e AHYPO_021301-RA 47 KKRKLSEEQVNMLEMSFGCEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKIEQEYSKLRNEKENLVVENCRLETEVLSLKDQLNE 138 9****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.763 | 42 | 102 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.4E-19 | 45 | 106 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-18 | 46 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.13E-16 | 47 | 103 | No hit | No description |
Pfam | PF00046 | 2.4E-17 | 47 | 101 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-20 | 49 | 109 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.4E-5 | 73 | 82 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 77 | 100 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 82 | 98 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MHEKDDSMGL ISQLYSGLYT QMAPQQGEKP KRRRRKKNKS EESNLAKKRK LSEEQVNMLE 60 MSFGCEHKLE SERKDRLASE LGLDPRQVAV WFQNRRARWK NKKIEQEYSK LRNEKENLVV 120 ENCRLETEVL SLKDQLNEAK KEIEKLANER SSAISSTADN ISSNSPSSSL TTMDYHPNLI 180 NPQILVEEQF GMEGCFYDTL FYVPENVPNV DWVDLYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 36 | PKRRRRKK |
2 | 30 | 35 | KRRRRK |
3 | 30 | 36 | KRRRRKK |
4 | 32 | 49 | RRRKKNKSEESNLAKKRK |
5 | 34 | 49 | RKKNKSEESNLAKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010681120.1 | 3e-97 | PREDICTED: homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | Q9ZU70 | 3e-65 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A0K9RM94 | 2e-73 | A0A0K9RM94_SPIOL; Uncharacterized protein | ||||
STRING | XP_010681120.1 | 1e-96 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-58 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_021301-RA |
Publications ? help Back to Top | |||
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