PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021206-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family FAR1
Protein Properties Length: 411aa    MW: 46663.6 Da    PI: 9.9953
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021206-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.37.1e-2066170190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdgkwevt 79 
                      +fY++YA  +GF++rks++k+++r++e +     C+keg++e++k                 +++ +r+r +tr+gCka++ +k  +d+k+ v+
  AHYPO_021206-RA  66 EFYKRYAFAAGFNTRKSTTKRQRRSNELKALYILCNKEGYKEKRKPIvekdlnnnegesnedKTSIKRKRLVTRVGCKAHIILKHCDDNKFIVS 159
                      6*****************************************998778999********998889999************************** PP

             FAR1  80 kleleHnHela 90 
                      ++++ H+H+l 
  AHYPO_021206-RA 160 QFHEGHTHPLY 170
                      *********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-1866170IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MMSNNEELHS HSSTTTIAAT TPTIVVSPEV AHLLTPGGTK EWLPICSNEL KPAIGMKFIN  60
LEQGLEFYKR YAFAAGFNTR KSTTKRQRRS NELKALYILC NKEGYKEKRK PIVEKDLNNN  120
EGESNEDKTS IKRKRLVTRV GCKAHIILKH CDDNKFIVSQ FHEGHTHPLY TPSCNLFQKE  180
GRKMNILHKK IIVNNSKLFY RQGIPCRHMI WVWNAKTFET IPQQYMIHRW TTMALKKPIF  240
DLGGNLLEQC ANLIDKKKLL NDLWSEIHTC VSLAESNDED IQDLVMNLQG IRKDLEAKRF  300
ARNNETTGSA NNKGQDIELL IGASVPTEVI VKPPKISKNK GTGVHVSNVE TSKEKGAEID  360
LPNVETRGRS AKRLKGEKEK ATEQNQKKKR LCRGCGELSH HDTRNCPNKV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021731266.11e-140protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-10FAR1-related sequence 5