PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_021162-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 65aa MW: 7409.68 Da PI: 10.6223 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.1 | 8.3e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye++s AHYPO_021162-RA 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSRGKLYEFAS 59 79***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.693 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-29 | 3 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.60E-37 | 3 | 59 | No hit | No description |
Pfam | PF00319 | 1.2E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSS RGKLYEFASC 60 RYDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-19 | 1 | 63 | 1 | 63 | MEF2C |
5f28_B | 1e-19 | 1 | 63 | 1 | 63 | MEF2C |
5f28_C | 1e-19 | 1 | 63 | 1 | 63 | MEF2C |
5f28_D | 1e-19 | 1 | 63 | 1 | 63 | MEF2C |
6bz1_A | 2e-19 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6bz1_B | 2e-19 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6bz1_C | 2e-19 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6bz1_D | 2e-19 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007134936.1 | 5e-37 | hypothetical protein PHAVU_010G088100g | ||||
Refseq | XP_007134937.1 | 5e-37 | hypothetical protein PHAVU_010G088100g | ||||
Refseq | XP_021748345.1 | 1e-35 | MADS-box protein SOC1-like isoform X2 | ||||
Swissprot | Q9XJ60 | 4e-34 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | V7ARU4 | 1e-35 | V7ARU4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007134936.1 | 2e-36 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 3e-36 | AGAMOUS-like 14 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_021162-RA |