PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021142-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRAS
Protein Properties Length: 573aa    MW: 65256.8 Da    PI: 6.63
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021142-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.62.1e-1131995701374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++l+++cAea++ +d++ a++lL++++++a+p gd+ qR+a+yf+++L+ar+++++sely+a   ++ +    s+ l  +kl++ + P+++ s
  AHYPO_021142-RA 199 LRTLMTQCAEAIAGSDFATANELLKQIRQHATPFGDSAQRVAHYFANGLEARMNGTGSELYRASDWKRFT---PSDILRGYKLYVSAIPFMRAS 289
                      57899********************************************************999999998...799999*************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      h +aNq+I++ +e++ ++HiiDf+i  G+QWp+L+q+L+ Rp gpp+l+iTgv++p+sg   ++++eetg+rLa ++e++gvpfef+  +a+++
  AHYPO_021142-RA 290 HYLANQTIVKLAEKAPKIHIIDFGIFLGFQWPCLIQTLSRRPLGPPRLKITGVDNPQSGfkPAKMIEETGRRLAGYCERFGVPFEFQG-IAQKW 382
                      **********************************************************9999**************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +++++++L+++++E ++V++ ++ ++l+desv+++s+rd vLkl++sl+P+++++   +   n++ F +rf eal++ys+lfd +ea++ +e++
  AHYPO_021142-RA 383 HTVNPDDLNIQKDELVIVSCLFRSKQLPDESVEINSPRDGVLKLIRSLNPDLFIHGVINGTFNAPFFITRFREALYHYSSLFDVFEATMLHEDQ 476
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      er+ +E+ l g++++n+vaceg+er+er et+++W+ r ++ GF +v+ ++ +++ a++++r  + + +++e+++ ++v+gWk+r + ++S+W+
  AHYPO_021142-RA 477 ERQLIENYLYGKDAMNIVACEGSERIERPETYKQWQVRHQRTGFVQVQWDQAVVNRARAMVRANYHKDFMLEQDKYWMVQGWKGRVINAMSCWK 570
                      *****************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.355173550IPR005202Transcription factor GRAS
PfamPF035147.2E-111199570IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MNDILMEEDM DDDGRLVNLQ DHHALQATEK SFYDVLGETY PPSSSDQPIK VSDDQSRCLM  60
MHHVLESSEC SAGSSSSFNC LGDGFVDSPV STLFDNELNY VVNSGLNRVY KEKNRNRREN  120
VSDVEERSAK QVAASNEEYA QMEEFDDVLI SKEGNDDISP CVSKSAVKEA SVQDEKPKGS  180
KSKRKSRAKK KTNKEMVDLR TLMTQCAEAI AGSDFATANE LLKQIRQHAT PFGDSAQRVA  240
HYFANGLEAR MNGTGSELYR ASDWKRFTPS DILRGYKLYV SAIPFMRASH YLANQTIVKL  300
AEKAPKIHII DFGIFLGFQW PCLIQTLSRR PLGPPRLKIT GVDNPQSGFK PAKMIEETGR  360
RLAGYCERFG VPFEFQGIAQ KWHTVNPDDL NIQKDELVIV SCLFRSKQLP DESVEINSPR  420
DGVLKLIRSL NPDLFIHGVI NGTFNAPFFI TRFREALYHY SSLFDVFEAT MLHEDQERQL  480
IENYLYGKDA MNIVACEGSE RIERPETYKQ WQVRHQRTGF VQVQWDQAVV NRARAMVRAN  540
YHKDFMLEQD KYWMVQGWKG RVINAMSCWK PA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-551895718379Protein SCARECROW
5b3h_D3e-551895718379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685728.10.0PREDICTED: scarecrow-like protein 30
TrEMBLA0A0K9RTH30.0A0A0K9RTH3_SPIOL; Uncharacterized protein
STRINGXP_010685728.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-150GRAS family protein