PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_021139-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

GRAS

Protein Properties

Length: 708aa MW: 79557.3 Da PI: 5.3817

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_021139-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	370.7	2e-113	335	705	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL++cA+av+s dl++a++ L+++++++sp+gd++qRla+yf+++L+arla+++s+++ + + s ss+ l+a+++++ + P+ ++s+ AHYPO_021139-RA 335 MTLLTHCAQAVASFDLRAANERLKQIRQHSSPYGDSIQRLAHYFANGLEARLAGTGSTVSGNVVDARIS---SSDFLKAYRFYVSAIPCKRMSF 425 679*************************************************999999877777766...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 ++aN++I + +e+++r+Hi+Df++ GlQWp+L+q La+Rp+gp +lRiTg++ p++g +e++e+tg+rL+ ++e+++vpf++++ +ak+++ AHYPO_021139-RA 426 FLANNTIIKLAEKATRIHIVDFGVLLGLQWPCLIQNLAKRPNGPVKLRITGIDYPQQGfrPSERVEATGRRLEGYCERFNVPFQYQA-IAKKWD 518 *****************************************************9*************************.7* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 +++le+++++p+E ++Vn+ ++ +llde+v++ +++d +Lkl+k+l+P ++++ + +n++ F +rf eal +ys++f+ ++++ re++e AHYPO_021139-RA 519 SIKLEDIKIEPDELVIVNCLFRSGQLLDETVEMGNQKDGFLKLIKQLNPSLFIHGVVNGTYNAPFFITRFREALFHYSSIFNIFDETSTREEHE 612 ********************************************************************************99999* PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r +E el++re+ nv+acegaer++r et+++W+ r +aGFk++pl+ + ak++++ + + + v+e+++++++gWk+r+L+++S W+ AHYPO_021139-RA 613 RLLIESELFAREALNVIACEGAERIQRPETYKQWQVRTARAGFKQLPLDRELLGRAKAMVKANYHKDFVVDEDRHWMLQGWKGRTLFALSIWQ 705 ************************************************************888***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.365	308	685	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-111	335	705	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
MYPVLVDPEL LSNFSNIQNF VNGITQDEIF ANGITQEEIF GNGITHDEIF RNGMTQDEIL 60 GNGITQDDLF QTHDLIVQNI PSSDINPDSV DVPDFSDACI KFLSDILEED LDEIPATVHD 120 YGALKATEKS LIDALREDFS FSDNPTSSLD QSIKYPDGSS LNRSLDSNHG IDGYFNSNTP 180 TSFESNWVQN QTQLDPLILS LSDLSNSTLE VKPRSSDSCN SDGCTNGSAT SPSSTSTSAG 240 PEKRNKVVSR SRKKKNLRRD DGANEGGRSN KQQAFSNEDY VEMKQYDDIL LCREVKDGIA 300 LINNEVANKG QGKDSKSKTT RGKKQNNAVE EVDLMTLLTH CAQAVASFDL RAANERLKQI 360 RQHSSPYGDS IQRLAHYFAN GLEARLAGTG STVSGNVVDA RISSSDFLKA YRFYVSAIPC 420 KRMSFFLANN TIIKLAEKAT RIHIVDFGVL LGLQWPCLIQ NLAKRPNGPV KLRITGIDYP 480 QQGFRPSERV EATGRRLEGY CERFNVPFQY QAIAKKWDSI KLEDIKIEPD ELVIVNCLFR 540 SGQLLDETVE MGNQKDGFLK LIKQLNPSLF IHGVVNGTYN APFFITRFRE ALFHYSSIFN 600 IFDETSTREE HERLLIESEL FAREALNVIA CEGAERIQRP ETYKQWQVRT ARAGFKQLPL 660 DRELLGRAKA MVKANYHKDF VVDEDRHWML QGWKGRTLFA LSIWQPC*

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

MYPVLVDPEL LSNFSNIQNF VNGITQDEIF ANGITQEEIF GNGITHDEIF RNGMTQDEIL  60
GNGITQDDLF QTHDLIVQNI PSSDINPDSV DVPDFSDACI KFLSDILEED LDEIPATVHD  120
YGALKATEKS LIDALREDFS FSDNPTSSLD QSIKYPDGSS LNRSLDSNHG IDGYFNSNTP  180
TSFESNWVQN QTQLDPLILS LSDLSNSTLE VKPRSSDSCN SDGCTNGSAT SPSSTSTSAG  240
PEKRNKVVSR SRKKKNLRRD DGANEGGRSN KQQAFSNEDY VEMKQYDDIL LCREVKDGIA  300
LINNEVANKG QGKDSKSKTT RGKKQNNAVE EVDLMTLLTH CAQAVASFDL RAANERLKQI  360
RQHSSPYGDS IQRLAHYFAN GLEARLAGTG STVSGNVVDA RISSSDFLKA YRFYVSAIPC  420
KRMSFFLANN TIIKLAEKAT RIHIVDFGVL LGLQWPCLIQ NLAKRPNGPV KLRITGIDYP  480
QQGFRPSERV EATGRRLEGY CERFNVPFQY QAIAKKWDSI KLEDIKIEPD ELVIVNCLFR  540
SGQLLDETVE MGNQKDGFLK LIKQLNPSLF IHGVVNGTYN APFFITRFRE ALFHYSSIFN  600
IFDETSTREE HERLLIESEL FAREALNVIA CEGAERIQRP ETYKQWQVRT ARAGFKQLPL  660
DRELLGRAKA MVKANYHKDF VVDEDRHWML QGWKGRTLFA LSIWQPC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-53	338	705	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019106559.1	0.0	PREDICTED: scarecrow-like protein 34
TrEMBL	A0A0K9QAZ3	0.0	A0A0K9QAZ3_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010685731.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46600.2	1e-159	GRAS family protein

Link Out ? help Back to Top
Phytozome	AHYPO_021139-RA