PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_021138-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

GRAS

Protein Properties

Length: 688aa MW: 77941.4 Da PI: 4.7795

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_021138-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	363.1	3.8e-111	314	685	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+avss dl+ a++lL+++++++sp+gd++qRla++++++L+arla+++s+ ++ + s ss+ l+ +++++ + P+ ++ AHYPO_021138-RA 314 LRTLLIQCAQAVSSFDLRTANELLKQIRQHSSPYGDSIQRLAHHVANGLEARLAGTGSTFTTNISDIQIS---SSDFLKGYRVYVSAIPFKRVN 404 6789*************************************************888888877777777...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 +++aN+aIl+ +e+++++HiiDf++ GlQWp+L+q+L++Rp+gpp+lRiTg++ p++g e++++tg+rLa ++e++gvpfe++ +a+++ AHYPO_021138-RA 405 FFLANNAILKLTEKATKIHIIDFGVFLGLQWPCLIQSLSKRPNGPPKLRITGIDLPQPGfrPCERINATGRRLAGYCERFGVPFEYQG-IAEKW 497 ******************************************************99999*********************.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e++++eeL+++++E ++Vn++ + +llde+v+ +s+rd++L+l+++l+P+++++ + +++ F rf eal +ys++f+ +ea+lpr+++ AHYPO_021138-RA 498 ENVQPEELKIESDEIVIVNCMCRSGTLLDETVDANSPRDAFLELIRKLNPTLFIHGIVNGTFTAPFFISRFKEALFHYSSIFEVFEATLPRHAH 591 ****************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 er+ +E e+ ++e+ nvvaceg+er++r et+++W+ r +aG++++pl+ + + qak +++ + + + v+e+++++++gWk+r ++S+W+ AHYPO_021138-RA 592 ERKLIESEIYEKELINVVACEGSERIQRPETYKQWQVRSARAGLRQLPLDREFVRQAKVMIKANYHEDFLVDEDRHWMLQGWKGRIFCALSFWQ 685 *************************************************************999***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.488	288	665	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-108	314	685	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MNSVLVDSDF MNNVFKLNPE MLSNFPKNSP FEEFFQNSDY VDPQILPSDH NEGNISLEEP 60 NLINLDTLSL EQNESNISSE IPDFPDDCLK FISEILLEEN LDENPASAQE FLALQATEKS 120 LYDVIGESYP YPYSDSTQNQ NPESPDATCS NNSFSSLDSN LSFNQPELDP FVSVDDFVQS 180 FLELNPQTYD PNVEDPNDGL VSGGVVNKLP SSDPVKREKS VRGLRRKKSR QRDDVSDEGV 240 RSNKIQAAMS EDYAEMKEYD DVLLSDEHNA DVTYSPNSRC SADEAGGKMS KKGGDRSRKT 300 RGKKQNIKVD EVDLRTLLIQ CAQAVSSFDL RTANELLKQI RQHSSPYGDS IQRLAHHVAN 360 GLEARLAGTG STFTTNISDI QISSSDFLKG YRVYVSAIPF KRVNFFLANN AILKLTEKAT 420 KIHIIDFGVF LGLQWPCLIQ SLSKRPNGPP KLRITGIDLP QPGFRPCERI NATGRRLAGY 480 CERFGVPFEY QGIAEKWENV QPEELKIESD EIVIVNCMCR SGTLLDETVD ANSPRDAFLE 540 LIRKLNPTLF IHGIVNGTFT APFFISRFKE ALFHYSSIFE VFEATLPRHA HERKLIESEI 600 YEKELINVVA CEGSERIQRP ETYKQWQVRS ARAGLRQLPL DREFVRQAKV MIKANYHEDF 660 LVDEDRHWML QGWKGRIFCA LSFWQPS*

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MNSVLVDSDF MNNVFKLNPE MLSNFPKNSP FEEFFQNSDY VDPQILPSDH NEGNISLEEP  60
NLINLDTLSL EQNESNISSE IPDFPDDCLK FISEILLEEN LDENPASAQE FLALQATEKS  120
LYDVIGESYP YPYSDSTQNQ NPESPDATCS NNSFSSLDSN LSFNQPELDP FVSVDDFVQS  180
FLELNPQTYD PNVEDPNDGL VSGGVVNKLP SSDPVKREKS VRGLRRKKSR QRDDVSDEGV  240
RSNKIQAAMS EDYAEMKEYD DVLLSDEHNA DVTYSPNSRC SADEAGGKMS KKGGDRSRKT  300
RGKKQNIKVD EVDLRTLLIQ CAQAVSSFDL RTANELLKQI RQHSSPYGDS IQRLAHHVAN  360
GLEARLAGTG STFTTNISDI QISSSDFLKG YRVYVSAIPF KRVNFFLANN AILKLTEKAT  420
KIHIIDFGVF LGLQWPCLIQ SLSKRPNGPP KLRITGIDLP QPGFRPCERI NATGRRLAGY  480
CERFGVPFEY QGIAEKWENV QPEELKIESD EIVIVNCMCR SGTLLDETVD ANSPRDAFLE  540
LIRKLNPTLF IHGIVNGTFT APFFISRFKE ALFHYSSIFE VFEATLPRHA HERKLIESEI  600
YEKELINVVA CEGSERIQRP ETYKQWQVRS ARAGLRQLPL DREFVRQAKV MIKANYHEDF  660
LVDEDRHWML QGWKGRIFCA LSFWQPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-50	298	686	3	380	Protein SCARECROW
5b3h_A	4e-50	320	686	24	379	Protein SCARECROW
5b3h_D	4e-50	320	686	24	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021863662.1	0.0	scarecrow-like protein 30
TrEMBL	A0A0K9QTP6	0.0	A0A0K9QTP6_SPIOL; Uncharacterized protein
STRING	XP_010685735.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-156	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	AHYPO_021138-RA