PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_021039-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 195aa MW: 21838.3 Da PI: 6.7871

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_021039-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.4e-10	96	141	6	51
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 + rr+ NReA r++R++Kka +++Le++vk+L N++L +l+ AHYPO_021039-RA 96 KPRRASGNREAVRKYREKKKAHTAHLEQEVKNLRFMNQQLYRKLQG 141 5689999*********************************988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-5	89	158	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.25E-8	95	140	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.5E-11	96	156	No hit	No description
CDD	cd14686	4.64E-10	98	135	No hit	No description
Pfam	PF07716	2.4E-12	98	148	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MDDGEIEPSD PAFLQNPSTC SNNNNNNSLP GGSVSIDSVS IIDEILKHNK RTCTHTHTCN 60 PPGPDAIHTH TCYHTHTQVF SSEEDTKNRC EPPSLKPRRA SGNREAVRKY REKKKAHTAH 120 LEQEVKNLRF MNQQLYRKLQ GQAALEAELL RLRALLIGLR GKIDVELGNF GFNTTDIGTS 180 FKEGEPEPEP VYEY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021749554.1	3e-71	basic leucine zipper 23-like
Swissprot	Q8GTS2	3e-46	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A0D2RZM3	2e-64	A0A0D2RZM3_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2TKM6	2e-64	A0A0D2TKM6_GOSRA; Uncharacterized protein
TrEMBL	A0A0K9QL71	3e-64	A0A0K9QL71_SPIOL; Uncharacterized protein
STRING	Gorai.012G081200.1	3e-65	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51960.2	1e-28	basic leucine zipper 24

Link Out ? help Back to Top
Phytozome	AHYPO_021039-RA

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]