PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_020914-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 114aa MW: 12682.3 Da PI: 9.2929 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H AHYPO_020914-RA 55 FSCTYCKRKFYSSQALGGHQNAH 77 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.53E-6 | 53 | 82 | No hit | No description |
PROSITE profile | PS50157 | 11.032 | 55 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MDFELKSSSS DLHPQMINLD LELDLMLDRS SSSSVSSPAS FSRPSSSAVG EARVFSCTYC 60 KRKFYSSQAL GGHQNAHKLE RTLAKRNKEL SRHGTIIMSH NSSLSDHMGM FRAQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831246.1 | 2e-26 | PREDICTED: zinc finger protein 2 | ||||
Swissprot | Q39261 | 4e-19 | ZFP2_ARATH; Zinc finger protein 2 | ||||
TrEMBL | A0A0E0LXV5 | 6e-22 | A0A0E0LXV5_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A0K9RFM0 | 1e-21 | A0A0K9RFM0_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | Migut.J01452.1.p | 8e-26 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 3e-21 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_020914-RA |