PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020843-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HB-other
Protein Properties Length: 1836aa    MW: 203644 Da    PI: 4.8025
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020843-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-183490157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     + kR   t++qle+Le+ ++  +yps++ r+eL+++lgL++rq ++WF+ rR k++k
  AHYPO_020843-RA 34 KTKRKMKTPSQLEALEKTYQIASYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 90
                     679****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-18891IPR009057Homeodomain-like
SuperFamilySSF466891.54E-162191IPR009057Homeodomain-like
PROSITE profilePS5007116.7633191IPR001356Homeobox domain
SMARTSM003893.0E-183395IPR001356Homeobox domain
PfamPF000462.2E-163490IPR001356Homeobox domain
CDDcd000862.41E-153492No hitNo description
SMARTSM005713.6E-24590649IPR018501DDT domain
PROSITE profilePS5082717.61590649IPR018501DDT domain
PfamPF027911.6E-17591646IPR018501DDT domain
PfamPF050661.9E-14772840IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156122.4E-910021045IPR028942WHIM1 domain
PfamPF156133.7E-1111811252IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1836 aa     Download sequence    Send to blast
MMEGGNSDGE KKPPESGGDG GGGGGGTGGS GEPKTKRKMK TPSQLEALEK TYQIASYPSE  60
ALRAELSAQL GLSDRQLQMW FCHRRLKDRK PQPSSGGGGG GSSGKRSRKG DLLPSVTATV  120
TVAAAGTPPL PPPPVVPKDD MLGSELGIEH GSGSGSGSSP YGHMDPRRAY VGRPGVAVPR  180
ISGHGRYYEA PQSVSELRAI AFVEAQLGEP LREDGPALGM EFDPLPPGAF GAPIAASMAP  240
QKTAGRTYEV SVYERSDAKS TKGPSRALHE YQFLPEQPTV RSESYERVSQ SHYYGSPSDG  300
PGTKTPPLSS GRSNMHGYDE VPVAYGVQNQ LPSLNLMPHQ GNVSNHMSST SGDYEAMTRK  360
SPYMNVGMES SLSTHPISGM ASALVPSERR ATQEEDAGRL ERKRKSEEAR IAKEIEAHEK  420
KMRKELERQD ILRRKREEQM RKEMERQDRE RRKEEERLLR EKQREEERYQ REQRREMERR  480
EKFLLKESIR AEKMKQKEEV RREREAARQK AANDRAVAKR LAKESTELIE DERLELMEIA  540
ASRKSLTSIL SLDSETLQNL DSFRDMLRRF PPKSVQLKKP FATRPWLGSE ENVGNLLMVW  600
RFLITFTDVL GLWPFTLDEF VQAFHDYDPR LLGEIHVALL RTVIKDIEDV ARTPSIGLGV  660
NLNSVANPVG GHPQIVEGAY AWGFDIRSWQ CNLSPLTWPE VLRQFALAAG FGPKLKKRNV  720
EQGFSREENE GNDGIDVVSN LRNGAAVEKA VAIMRERGYS NPRRSRHRLT PGTVKFAAFH  780
VLSLEGSDGL NILEVADRIQ KSGLRDLTTS KTPEASIAAA LSRDTKLFER TAPSTYCVRS  840
PYRKDPVDAE AILSSAREKI RVFKIGFADE VEADVDGMGA DDVEADEVEK DEESESDTAE  900
DPEIDDLASE LTPNKEANLS YDMNTCVPRI GSDNGSDSHS RTVDKTSNGL VNAGDVLSSA  960
HLESFKEMDN SGCFVEESID VGGICQEANN TDHEDTDVDE SCPGEPWVQG LMEGEYSNLS  1020
VEERLNALVA LIDVATEGNT IRVALEERLE AATALKKQMW AEAQLDKRRL KEEFLMKTPY  1080
ATFVSNKSES NMMASAADTG HSPMLSFDKN NNETTMQQKS FFDAHIDNNL NAASSEKNST  1140
PNYVLGSDNV ASQQSVYAAE RCRAQLKSYI GHKAEEMYVY RSLPLGQDRR RNRYWQFIAS  1200
ACCNDPGAGR LFVELHNGGW RLIDSEEGFD ALLASLDVRG VRECHLHALL RKVELLYKES  1260
VRKKGSDTTI DRQNGFSVKA EASEVPFNRE SSGGIDSPSS TICALNSETS EPSSSFKIES  1320
GRNSFETTNS LRRYKSFEDW MWKECFSSSA LCATKFGKKR CTELISRCDS CRDLYFFEDN  1380
HCPSCHKTYT AYDKSFNFSE HVVQCEEIKG SLQSLEYPPP RIRLLKALLA QVEVCVPSEA  1440
LQPFWSDDYR KSWGMKLNMS SSAEDLLQRD FLSSHFETTG ELLASGNVDG YVVNDVSTFG  1500
SITMLPWIPQ TTSAVALRLM ELDSAISYLP DQKEKDSEPR HFLKLTSKYT IVRNVPEDEL  1560
AGEDQQEDVW NDRGSDLGFV SIRGSNGRGG RGRTRGGKSQ RRIGSRVGEP SSRSVASNER  1620
LGDGLGGWKG RSSRGKGGRK RGRRSVRKRQ KSVKKVAPAA TASVGVRSLP EPIIFDKSPP  1680
GFSGRDEWNG EDSRQVMADE VDVNDDSNSE RSDYVDDEHG QASGDEYDDY AAVYNGRPTS  1740
HGHYNVDGDE EDDDNDNDND NDEVGDDDDD DDDRDEVADF VDEDDMDVDG GEYEQGDLDV  1800
GGYLNADSDD EIVGNGDDDQ DDTSESASTE YSSDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11526SGGDGGGGGGGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689786.10.0PREDICTED: homeobox-DDT domain protein RLT2 isoform X2
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A0K9RUY60.0A0A0K9RUY6_SPIOL; Uncharacterized protein
STRINGXP_010689786.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator