PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_020843-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | HB-other | ||||||||
Protein Properties | Length: 1836aa MW: 203644 Da PI: 4.8025 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 34 | 90 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+ ++ +yps++ r+eL+++lgL++rq ++WF+ rR k++k AHYPO_020843-RA 34 KTKRKMKTPSQLEALEKTYQIASYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 90 679****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 8 | 91 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-16 | 21 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.763 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-18 | 33 | 95 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-16 | 34 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.41E-15 | 34 | 92 | No hit | No description |
SMART | SM00571 | 3.6E-24 | 590 | 649 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 17.61 | 590 | 649 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.6E-17 | 591 | 646 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.9E-14 | 772 | 840 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 2.4E-9 | 1002 | 1045 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 3.7E-11 | 1181 | 1252 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1836 aa Download sequence Send to blast |
MMEGGNSDGE KKPPESGGDG GGGGGGTGGS GEPKTKRKMK TPSQLEALEK TYQIASYPSE 60 ALRAELSAQL GLSDRQLQMW FCHRRLKDRK PQPSSGGGGG GSSGKRSRKG DLLPSVTATV 120 TVAAAGTPPL PPPPVVPKDD MLGSELGIEH GSGSGSGSSP YGHMDPRRAY VGRPGVAVPR 180 ISGHGRYYEA PQSVSELRAI AFVEAQLGEP LREDGPALGM EFDPLPPGAF GAPIAASMAP 240 QKTAGRTYEV SVYERSDAKS TKGPSRALHE YQFLPEQPTV RSESYERVSQ SHYYGSPSDG 300 PGTKTPPLSS GRSNMHGYDE VPVAYGVQNQ LPSLNLMPHQ GNVSNHMSST SGDYEAMTRK 360 SPYMNVGMES SLSTHPISGM ASALVPSERR ATQEEDAGRL ERKRKSEEAR IAKEIEAHEK 420 KMRKELERQD ILRRKREEQM RKEMERQDRE RRKEEERLLR EKQREEERYQ REQRREMERR 480 EKFLLKESIR AEKMKQKEEV RREREAARQK AANDRAVAKR LAKESTELIE DERLELMEIA 540 ASRKSLTSIL SLDSETLQNL DSFRDMLRRF PPKSVQLKKP FATRPWLGSE ENVGNLLMVW 600 RFLITFTDVL GLWPFTLDEF VQAFHDYDPR LLGEIHVALL RTVIKDIEDV ARTPSIGLGV 660 NLNSVANPVG GHPQIVEGAY AWGFDIRSWQ CNLSPLTWPE VLRQFALAAG FGPKLKKRNV 720 EQGFSREENE GNDGIDVVSN LRNGAAVEKA VAIMRERGYS NPRRSRHRLT PGTVKFAAFH 780 VLSLEGSDGL NILEVADRIQ KSGLRDLTTS KTPEASIAAA LSRDTKLFER TAPSTYCVRS 840 PYRKDPVDAE AILSSAREKI RVFKIGFADE VEADVDGMGA DDVEADEVEK DEESESDTAE 900 DPEIDDLASE LTPNKEANLS YDMNTCVPRI GSDNGSDSHS RTVDKTSNGL VNAGDVLSSA 960 HLESFKEMDN SGCFVEESID VGGICQEANN TDHEDTDVDE SCPGEPWVQG LMEGEYSNLS 1020 VEERLNALVA LIDVATEGNT IRVALEERLE AATALKKQMW AEAQLDKRRL KEEFLMKTPY 1080 ATFVSNKSES NMMASAADTG HSPMLSFDKN NNETTMQQKS FFDAHIDNNL NAASSEKNST 1140 PNYVLGSDNV ASQQSVYAAE RCRAQLKSYI GHKAEEMYVY RSLPLGQDRR RNRYWQFIAS 1200 ACCNDPGAGR LFVELHNGGW RLIDSEEGFD ALLASLDVRG VRECHLHALL RKVELLYKES 1260 VRKKGSDTTI DRQNGFSVKA EASEVPFNRE SSGGIDSPSS TICALNSETS EPSSSFKIES 1320 GRNSFETTNS LRRYKSFEDW MWKECFSSSA LCATKFGKKR CTELISRCDS CRDLYFFEDN 1380 HCPSCHKTYT AYDKSFNFSE HVVQCEEIKG SLQSLEYPPP RIRLLKALLA QVEVCVPSEA 1440 LQPFWSDDYR KSWGMKLNMS SSAEDLLQRD FLSSHFETTG ELLASGNVDG YVVNDVSTFG 1500 SITMLPWIPQ TTSAVALRLM ELDSAISYLP DQKEKDSEPR HFLKLTSKYT IVRNVPEDEL 1560 AGEDQQEDVW NDRGSDLGFV SIRGSNGRGG RGRTRGGKSQ RRIGSRVGEP SSRSVASNER 1620 LGDGLGGWKG RSSRGKGGRK RGRRSVRKRQ KSVKKVAPAA TASVGVRSLP EPIIFDKSPP 1680 GFSGRDEWNG EDSRQVMADE VDVNDDSNSE RSDYVDDEHG QASGDEYDDY AAVYNGRPTS 1740 HGHYNVDGDE EDDDNDNDND NDEVGDDDDD DDDRDEVADF VDEDDMDVDG GEYEQGDLDV 1800 GGYLNADSDD EIVGNGDDDQ DDTSESASTE YSSDE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 26 | SGGDGGGGGGGT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010689786.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT2 isoform X2 | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A0K9RUY6 | 0.0 | A0A0K9RUY6_SPIOL; Uncharacterized protein | ||||
STRING | XP_010689786.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_020843-RA |