PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020842-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 462aa    MW: 50778.4 Da    PI: 6.1987
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020842-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.37.3e-28210264156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k++++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++
  AHYPO_020842-RA 210 KTKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 264
                      6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.171207266IPR017930Myb domain
SuperFamilySSF466896.09E-19207267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-27208267IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-26210264IPR006447Myb domain, plants
PfamPF002495.0E-8213262IPR001005SANT/Myb domain
PROSITE patternPS000740287300IPR033524Leu/Phe/Val dehydrogenases active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MLAVSPLRSN TKDGNKGGPM DPNPNFSMGS EEFPDFTGAN LLDSIDFDDL FMGMHEGDVL  60
PDLEMDPDLL AEFSLSTNTT LGDDSSDVNN SSAMSIENVI SSCEDGDLAL FDAYEVNNEN  120
INIHNNHNNN IIINNDVVSE IIGGIGKDEK VLEKDLKEDI ESKMDLKSDT RIPTNISSKE  180
SEKGKKSSSN SKVSGANNIS NNNNNQTKRK TKVDWTPELH RRFVQAVEQL GVDKAVPSRI  240
LELMGIDCLT RHNIASHLQK YRSHRKHLLA REAEAANWTQ KRQIYGVAMG GGKGGGNVSP  300
WYPPTMGFPP MTTMHQPFRP LHVWGHPTMD PQARVPMWPN KQLNVVPPTT PLPPSWAPPP  360
PHPTSADPSF WHQRRLQVAV AVPGIPPHTM LRPDQHGLLP QSGSRPSIDL HPSKESIDTA  420
IGEVLAKPWK PLPIGLKPPL MDSVLVELQR QGISKIPPSC P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-16208262357ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848304.10.0transcription activator GLK1-like
TrEMBLA0A0K9RD600.0A0A0K9RD60_SPIOL; Uncharacterized protein
STRINGXP_010689788.11e-178(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.15e-66GBF's pro-rich region-interacting factor 1