PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020840-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 310aa    MW: 35375.1 Da    PI: 10.3008
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020840-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05828323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C++Cgk F r  nL+ H r H
  AHYPO_020840-RA  8 CEICGKGFQRDQNLQLHRRGH 28
                     *******************88 PP
2zf-C2H214.10.0001382104123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H +t+
  AHYPO_020840-RA  82 WKCEKCNKKYAVQSDWKAHSKTC 104
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.75E-7528No hitNo description
SMARTSM003550.076628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551804777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.75E-777102No hitNo description
SMARTSM0035510082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRSGK EPKKRVYVCP EKTCVHHHPS  60
RALGDLTGIK KHFFRKHGEK KWKCEKCNKK YAVQSDWKAH SKTCGTREYK CDCGTIFSRR  120
DSFITHRAFC DALAEETARM NAANAHFNLN TNNNLNYPHL MGPNLGPAVA MAQHFSSIFR  180
PLSSSSTKQE TLEQPHPNPN QRSELFPLWF NTNNTHQLTQ TLQKPLINTQ TIPFLVPEAS  240
KPQPHFMNWD FGNKLISDNL QNINNNNIPN TTSFPSLYST NQNPQTNSSS NSSQIMSATA  300
LLQKAAQMGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3778142367Zinc finger protein JACKDAW
5b3h_F1e-3778142367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689779.11e-146PREDICTED: zinc finger protein MAGPIE
SwissprotQ9ZWA61e-110IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A061E4I01e-125A0A061E4I0_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRINGXP_010689779.11e-146(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.24e-87C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]