PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_020780-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

LBD

Protein Properties

Length: 232aa MW: 25561.1 Da PI: 6.6345

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_020780-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	109.7	2.2e-34	7	99	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+k+Cv+apyf++eq + +fa++hk+FGasnv+kll +lp ++r++a+ ++ yeA+ar++dP+yG+v +++ l+ql+a AHYPO_020780-RA 7 PCGACKFLRRKCVKGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLGHLPVNDRSEAAITISYEAQARLQDPIYGCVVNLQAQLVALKQLQA 99 7***********************89************************************************999998888888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.712	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-32	7	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MTGSGSPCGA CKFLRRKCVK GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLGHLPVND 60 RSEAAITISY EAQARLQDPI YGCVVNLQAQ LVALKQLQAA HQGIISGNNS TQNPNYERSC 120 SNYPQDVQSW LQSEYSQMVP PFESNYFNCS SQSSTIYGSN QSNHHGFDVN YDRINSMALQ 180 DDQDVSFASF DGSSSHHSTS LASRDFENKS KWPYHDTDDL HSVAFGYPQH S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-33	3	105	7	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-33	3	105	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021770209.1	1e-120	LOB domain-containing protein 29-like
Swissprot	Q9SLB6	1e-55	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	A0A2N9HGQ9	3e-78	A0A2N9HGQ9_FAGSY; Uncharacterized protein
STRING	XP_010679217.1	1e-115	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	6e-52	LBD family protein

Link Out ? help Back to Top
Phytozome	AHYPO_020780-RA

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]