PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020752-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family FAR1
Protein Properties Length: 264aa    MW: 30434.7 Da    PI: 9.1694
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020752-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.41.3e-1950137190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      +fY+++A+++GF+ r++++kk+k+++ i+ +  +C+k+g++++ +++   ++r+r+ +r +C+a++ ++  k+g+wev+k+++ H+H+++
  AHYPO_020752-RA  50 QFYKAHASMCGFTGRMRTHKKTKKTNDIYLKYIYCNKQGFNNDPTSA--INQRKRSLKRAECRAMVGLRACKEGHWEVYKFVESHTHHFS 137
                      6******************************************9988..88999*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1650137IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
IQCPSTELQI SSSPIPCYTP RGSKEWIPRC SKQYTPHIGM HFATLDEGVQ FYKAHASMCG  60
FTGRMRTHKK TKKTNDIYLK YIYCNKQGFN NDPTSAINQR KRSLKRAECR AMVGLRACKE  120
GHWEVYKFVE SHTHHFSSPK IMYHLTNTRE HTSAHMNLAE GRIDAMELLL EKLENAEMND  180
DTPTHIHEKR KSHIESFVGS NEIEINILNP PKSSNKGVVL ERGKRATEIL QLRNPEKISD  240
YAELVNNMEH TIVEIAQRKN LVKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192KRKSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK4Q0F03e-41K4Q0F0_BETVU; Uncharacterized protein
STRINGXP_010682235.13e-34(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.14e-13FAR1 family protein