PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AHYPO_020751-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 112aa MW: 13083 Da PI: 10.1721 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70 | 5.7e-22 | 11 | 98 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA ++GF+ r+ ++kk+k+++ i+ + +C+k+g++++ +++ ++r+r+ +r +C+a++ ++ k+g+wev+k+++ H+H+++ AHYPO_020751-RA 11 QFYKAYAPMCGFTGRMGTNKKTKKTNDIYLKYIYCNKQGFNNDPTSA--INQRKRSLKRAECRAMVGLRACKEGHWEVYKFVESHTHHFS 98 6******************************************9988..88999*********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.0E-19 | 11 | 98 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 112 aa Download sequence Send to blast |
MHFATLEGGV QFYKAYAPMC GFTGRMGTNK KTKKTNDIYL KYIYCNKQGF NNDPTSAINQ 60 RKRSLKRAEC RAMVGLRACK EGHWEVYKFV ESHTHHFSSP KIMYHLTNTR EH |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010678162.1 | 1e-28 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | K4Q0F0 | 1e-27 | K4Q0F0_BETVU; Uncharacterized protein | ||||
STRING | XP_010678162.1 | 4e-28 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-11 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | AHYPO_020751-RA |