PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020658-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19500.7 Da    PI: 10.7969
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020658-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.83e-23957149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ien+s r v fskRr+g++KKA+E+S+LC+aeva+i+fs+ gk + +
  AHYPO_020658-RA  9 KKIENSSTRLVAFSKRRTGLFKKANEISTLCGAEVAIIVFSPGGKAFSF 57
                     68******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.11E-29173IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.193161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-34160IPR002100Transcription factor, MADS-box
CDDcd002651.52E-32271No hitNo description
PRINTSPR004042.8E-21323IPR002100Transcription factor, MADS-box
PfamPF003194.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRRKIEMKK IENSSTRLVA FSKRRTGLFK KANEISTLCG AEVAIIVFSP GGKAFSFGQP  60
SVEKVLQQYQ NKNRHIQTQG SRTHKVRGLI LTQKLANLDV QLEIEKKNSE IHKAAVKRKI  120
DTNQSIAQLD LDELLKLQEQ IQDLSSKLEM RVREIEASHA LLMLANTSTF KK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-15184181MEF2C
5f28_B2e-15184181MEF2C
5f28_C2e-15184181MEF2C
5f28_D2e-15184181MEF2C
6bz1_A2e-15186183MEF2 CHIMERA
6bz1_B2e-15186183MEF2 CHIMERA
6bz1_C2e-15186183MEF2 CHIMERA
6bz1_D2e-15186183MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667929.12e-59PREDICTED: agamous-like MADS-box protein AGL29
STRINGXP_010667929.19e-59(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-30AGAMOUS-like 29