PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020485-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 416aa    MW: 46465.4 Da    PI: 8.557
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020485-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-066385123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C++ F r  nL+ H r+H
  AHYPO_020485-RA 63 YVCEICNQGFQRDQNLQMHRRRH 85
                     9*********************9 PP
2zf-C2H2171.6e-05140162123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C +C+k +  +s++k H++t+
  AHYPO_020485-RA 140 WVCDKCSKAYAVQSDFKAHLKTC 162
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.91E-66285No hitNo description
PROSITE profilePS5015710.976385IPR007087Zinc finger, C2H2
SMARTSM003550.00526385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
PROSITE patternPS01359065145IPR019786Zinc finger, PHD-type, conserved site
SMARTSM00355210104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4131161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.91E-6135160No hitNo description
SMARTSM0035572140160IPR015880Zinc finger, C2H2-like
SMARTSM0035548167189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLGGGSSSSS VPCSYHANNN ITSTSPTDNA SSNKRKRRPA GTPDPDAEVV SLSPKTLLES  60
DRYVCEICNQ GFQRDQNLQM HRRRHKVPWK LLKRENPVVR KRVFVCPEPS CLHHDPCHAL  120
GDLVGIKKHF RRKHSNHKQW VCDKCSKAYA VQSDFKAHLK TCGTRGHSCD CGRVFSRVES  180
FIEHQDACHM GRLRSSDHHQ QPNNNHQHQH QHQHQTVCLS RAASSSSPSN DTTNVTVAGP  240
WTTNTPKPSL HNLDLQLSVS PKGRNDHDEH NHSTQLQLSI GSTSDNNNTT ETNSNRNNKS  300
ATASSPSDHQ HHATAMAEKA YAEDARKEAK RQIELAEREF ANAKRIRQQA QMELDKAQAL  360
KEQAMKQISS TLLQITCHAC KQHFQTSSMS CVPAVVEDQH SSLAESQVED DSNMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17136188355Zinc finger protein JACKDAW
5b3h_F2e-17136188355Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687241.10.0PREDICTED: protein SHOOT GRAVITROPISM 5
SwissprotF4IPE31e-143IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A0K9S0330.0A0A0K9S033_SPIOL; Uncharacterized protein
STRINGXP_010687241.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-134indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]