PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020404-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family TALE
Protein Properties Length: 628aa    MW: 69471.4 Da    PI: 6.7353
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020404-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-094174541954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  AHYPO_020404-RA 417 FEHflHPYPKDSEKIMLARQTGLTRSQVANWFINARVR 454
                      664559******************************88 PP
2BELL90.71.5e-293043542272
             BELL  22 rYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      rYkqy++q+q+++ssF++vag g+akpYt+lAlk+iSrhFrcL+dai++qi
  AHYPO_020404-RA 304 RYKQYCHQMQILVSSFDMVAGGGAAKPYTALALKTISRHFRCLRDAITGQI 354
                      9*************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-36237352IPR006563POX domain
PfamPF075263.8E-7243296IPR006563POX domain
PfamPF075264.5E-24304351IPR006563POX domain
PROSITE profilePS5007112.195395458IPR001356Homeobox domain
SMARTSM003897.0E-10398462IPR001356Homeobox domain
CDDcd000866.87E-13398459No hitNo description
SuperFamilySSF466891.63E-17399465IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28401464IPR009057Homeodomain-like
PfamPF059202.1E-17415454IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MATYYPSSSA QLDVMSAPYV RDQKFPSYSE SHLLNGNMMM YLTSSSSPGS FSEVSPGSSM  60
NPQSGVEIPA INARNEMMFI PPTATGDSMC IQPISGPLNS VAGENVGNSM PGELQLTSRS  120
QMTMVDGEQN LQGLSLSLST QMSTAVSTSQ FQYQYSNPGL SSVLSPHLPL SAENNVRHMA  180
CKVDDASTNK DMRNSDYFPY EMQGEGHNGI RFGALNHSQY SINPKSVNCN PYQYEQAGMA  240
NTLLKSKYMK VAQQLLDEVV NVRDALKRSD SGRDQNSNKE DESSKESKGG SQAASESHEP  300
PAGRYKQYCH QMQILVSSFD MVAGGGAAKP YTALALKTIS RHFRCLRDAI TGQIQATRKS  360
LGEQDNGLGG AIPRLRYVDQ QLRQQRALQQ FGMMRHAWRP QRGLPESAVT ILRAWLFEHF  420
LHPYPKDSEK IMLARQTGLT RSQVANWFIN ARVRLWKPMV EEMYKEEFGE ADILNSRSSP  480
ENTPKLTREK SWGSEDRRED LQESSTSMAH DSKINMSQGI GGVGSNDNNH GFYSNNVSLS  540
SPDPNHPHLM VSNAAYHIPE LGNFSVDNQV SLALGLRHRE GDVTFRGNPT TEATMGVGTS  600
EYNPYLEQVN QQHRFGNPSH ILNDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16404462563Homeobox protein Meis2
3k2a_B2e-16404462563Homeobox protein Meis2
4xrs_A2e-16404461158Homeobox protein Meis1
4xrs_B2e-16404461158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021758316.10.0BEL1-like homeodomain protein 7
RefseqXP_021758317.10.0BEL1-like homeodomain protein 7
RefseqXP_021758318.10.0BEL1-like homeodomain protein 7
RefseqXP_021758319.10.0BEL1-like homeodomain protein 7
TrEMBLA0A0K9QQ740.0A0A0K9QQ74_SPIOL; Uncharacterized protein
STRINGXP_010672737.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.14e-94BEL1-like homeodomain 7