PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020403-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family TALE
Protein Properties Length: 428aa    MW: 47987.9 Da    PI: 6.3407
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020403-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.4e-103613981954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gLt++qV++WF N R +
  AHYPO_020403-RA 361 FEHflHPYPNDSEKLSLASQTGLTKNQVSNWFINARVR 398
                      664459******************************88 PP
2BELL93.71.7e-30223293272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +++lq+  +kL++lle+V+ rY  y++ ++ +issFe++ag g++k Yt+lAl+a+SrhF +L+dai+ qi
  AHYPO_020403-RA 223 KHDLQITLSKLITLLEQVEGRYDEYYQRMEDLISSFEVIAGEGASKCYTALALQAMSRHFCSLRDAIVTQI 293
                      6899*****************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.1E-23160291IPR006563POX domain
PfamPF075261.1E-30166290IPR006563POX domain
SMARTSM003895.0E-10342406IPR001356Homeobox domain
CDDcd000864.29E-12342403No hitNo description
Gene3DG3DSA:1.10.10.602.0E-27347408IPR009057Homeodomain-like
SuperFamilySSF466891.58E-17348410IPR009057Homeodomain-like
PfamPF059205.8E-17359398IPR008422Homeobox KN domain
PROSITE profilePS5007112.017361402IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MVSQETETNP TCSSSLHHFI ISSSNLISSQ THFDNPHYDA FGSHDINIRP FSDHQSLGNT  60
QFPTIQSLGE RMSRSINLVH DPSSVDDESD LGHTRHLMDL LGAPNEQTHG ENRLSLSLGS  120
QVGVLHTPQF RQTPLMHQPY NHLVDQHNCN PGDYSFMGNS SSAFSISNSI YLKPTKSVLE  180
EVIDLRSKDI DLSDVKRLFM SSRGLCAELR AELLSNSFVS ADKHDLQITL SKLITLLEQV  240
EGRYDEYYQR MEDLISSFEV IAGEGASKCY TALALQAMSR HFCSLRDAIV TQIKVARKKL  300
SPDLPKIGSA LTHLTLFDRE NTNTRMSLQQ IGLIQGAHRP AWRPIRGLPE TSVAILRAWL  360
FEHFLHPYPN DSEKLSLASQ TGLTKNQVSN WFINARVRLW KPMIEEMYKE EFGDSSVDSS  420
GEGQANC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-17348406563Homeobox protein Meis2
3k2a_B6e-17348406563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672774.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-98BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A0K9QNJ90.0A0A0K9QNJ9_SPIOL; Uncharacterized protein
STRINGXP_010672774.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-100BEL1-like homeodomain 11