PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_020331-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 597aa MW: 68208.5 Da PI: 10.1424

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_020331-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.8	1.4e-14	12	55	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E+ l++++ +++G+g+Wk+I+r + +Rt +q+ s+ qky AHYPO_020331-RA 12 HWTVLEHNLFLEGLEKFGKGSWKSISRLLK-TRTSNQVASHAQKY 55 5**************************9.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.011	5	60	IPR017930	Myb domain
SuperFamily	SSF46689	3.36E-14	8	61	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-9	9	55	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-11	9	58	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.1E-12	9	58	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-12	12	55	IPR001005	SANT/Myb domain
CDD	cd00167	2.43E-9	13	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence Send to blast
MDSDWHSSKG EHWTVLEHNL FLEGLEKFGK GSWKSISRLL KTRTSNQVAS HAQKYFARVK 60 KAEEKKKMLD EKVYDLSIGD KDVKGDNGGG SDEGVAGTQM GRETETVQCA LREPVSNMGD 120 KEGSRYYHPV FGDLRPFYPR RSNNEVTRIM DDYAQRKMGI GKKMRKEQKM IADTGVGSSV 180 GNKEGSRHYC SVLGDYQPFY PRRLSNTDNM MIMGDNGLAQ MEMGAEMRQE QRSIVDTGVG 240 NSVGYNEGSQ YYPRWSSNND NMRIIGDNDR AQMKTGTKIR KEHKTIANTG VGSSVGNNEG 300 SRYYPRWRSN SDNMRIMGDN ARAQMGMRVE MRKEQKAIAD IRLGSNVANN EGSWYYCPVL 360 GNYRPFYPRR WSNNDNMRIM SDNGRAQMGM RTEMRKEQKS IADTRAGSNM ANNKGSRYYR 420 PALGDYRPFY PKRWKNNDNM RIISDNARTQ MGMEKKMRKE QKTIKATGES SNAENNERSQ 480 FYHPTLANLP PFNPGWLINN ENMRIMSDTA RTQTGTGMRT ETKKKQKINV DIGESVNVAN 540 NQGSQYRHSV LTNFPPFYPG WRINNENMRT LDDTAGTQMG MITETRKEHK MIADRQ*

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence Send to blast

MDSDWHSSKG EHWTVLEHNL FLEGLEKFGK GSWKSISRLL KTRTSNQVAS HAQKYFARVK  60
KAEEKKKMLD EKVYDLSIGD KDVKGDNGGG SDEGVAGTQM GRETETVQCA LREPVSNMGD  120
KEGSRYYHPV FGDLRPFYPR RSNNEVTRIM DDYAQRKMGI GKKMRKEQKM IADTGVGSSV  180
GNKEGSRHYC SVLGDYQPFY PRRLSNTDNM MIMGDNGLAQ MEMGAEMRQE QRSIVDTGVG  240
NSVGYNEGSQ YYPRWSSNND NMRIIGDNDR AQMKTGTKIR KEHKTIANTG VGSSVGNNEG  300
SRYYPRWRSN SDNMRIMGDN ARAQMGMRVE MRKEQKAIAD IRLGSNVANN EGSWYYCPVL  360
GNYRPFYPRR WSNNDNMRIM SDNGRAQMGM RTEMRKEQKS IADTRAGSNM ANNKGSRYYR  420
PALGDYRPFY PKRWKNNDNM RIISDNARTQ MGMEKKMRKE QKTIKATGES SNAENNERSQ  480
FYHPTLANLP PFNPGWLINN ENMRIMSDTA RTQTGTGMRT ETKKKQKINV DIGESVNVAN  540
NQGSQYRHSV LTNFPPFYPG WRINNENMRT LDDTAGTQMG MITETRKEHK MIADRQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23650.1	2e-15	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	AHYPO_020331-RA