PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020322-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 499aa    MW: 57529.6 Da    PI: 7.0347
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020322-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.21.9e-2754138187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k+e+  L+e+r+em+ +++++  k++lW+evs+km+e g++rs+k+Ckek+en+ k+++++k++++ rt+++   +++fdqlea
  AHYPO_020322-RA  54 RWPKHETISLLEIRSEMDAAFKDSGCKAHLWDEVSRKMAELGYHRSAKKCKEKFENIYKYHRRVKNSSNARTKQKM--YRFFDQLEA 138
                      8*********************************************************************976665..*******85 PP
2trihelix90.22.2e-28327411186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k+ev +Li+++++me ++++   k+p Wee+s +m+  g+ r++k+Ckekwen+nk+y+++ke++k r   +s+tcpyf+ l+
  AHYPO_020322-RA 327 RWPKEEVEVLIKIKTNMELEYQKLGPKGPMWEEISMAMKNFGYDRNAKRCKEKWENINKYYRRVKESNKPR-HVDSKTCPYFHLLD 411
                      8********************************************************************98.78889******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.87647111IPR017877Myb-like domain
SMARTSM007170.03851113IPR001005SANT/Myb domain
CDDcd122033.09E-2253118No hitNo description
PfamPF138375.7E-1953139No hitNo description
PROSITE profilePS500907.724320384IPR017877Myb-like domain
SMARTSM007171.3324386IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-5326383IPR009057Homeodomain-like
PfamPF138377.2E-21326412No hitNo description
CDDcd122034.16E-23326391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MQENSEMHEI SLQRRENEVG KSVILEKAVE EAKNDGNNEN YGVSVAERNS PANRWPKHET  60
ISLLEIRSEM DAAFKDSGCK AHLWDEVSRK MAELGYHRSA KKCKEKFENI YKYHRRVKNS  120
SNARTKQKMY RFFDQLEALD HHQISLETSA SEPANTSLNV TPYAATPISS HPQRIPQTSL  180
PISVNLDSFT VSTSSASTSG SESEGTRMKK RKWVDCFNVL MKSVLAKQEA LHNKFLEAID  240
KHELNSRARD EAWKRLEMDR IKREQELLMQ ERSISAAKDA AILAFLQKVS EQGKCPEISE  300
PLLQIPSQDM SNVSRKEKDN GENSSSRWPK EEVEVLIKIK TNMELEYQKL GPKGPMWEEI  360
SMAMKNFGYD RNAKRCKEKW ENINKYYRRV KESNKPRHVD SKTCPYFHLL DTMYNMKTQR  420
SEYNSETSGS NFRPEELLLH IMNNPSKQPY QEPVVLQQAE GEWTMQNGKR DQNEEAENDE  480
ASGDFQVVHD PIPTNAVE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680281.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A0K9RRY00.0A0A0K9RRY0_SPIOL; Uncharacterized protein
STRINGXP_010680281.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-103Trihelix family protein