PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_020318-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

FAR1

Protein Properties

Length: 451aa MW: 51183.7 Da PI: 10.6048

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_020318-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.8	1.2e-20	66	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY++YA +GF++rks++k+++r++e +++ C+keg+re++k + +++ +r+r +tr+gCka++ +k +d+k+ v+ AHYPO_020318-RA 66 EFYKRYAFAAGFNTRKSTTKRQRRSKELKSQYILCNKEGYREKRKPTvekdlinnegesnkeKTSIKRKRLVTRIGCKAHIILKHCDDNKFIVS 159 6*****************************************9999******9988888899********************** PP FAR1 80 kleleHnHela 90 ++++ H+H+l AHYPO_020318-RA 160 QIHEGHTHPLY 170 *******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-18	66	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MMSNNEELHS HSSTTTNAAT TPTIVVSPKV APLLTPGGRK ELLSICSNEL KPAIRMKFNN 60 LEEGLEFYKR YAFAAGFNTR KSTTKRQRRS KELKSQYILC NKEGYREKRK PTVEKDLINN 120 EGESNKEKTS IKRKRLVTRI GCKAHIILKH CDDNKFIVSQ IHEGHTHPLY TPSCNLFHKE 180 GRKMNMLHKK IIVNNSKVWK AKRFETIPEQ YMIHRWTTMA LKKPSFDLGG NLLDLAESND 240 EDIQDLVMNL QAIRKDLEAK RFARNNETTG SANNKALDIE LLIGASVPAE VIVKPPKISK 300 NKGTGIHVSN VGTSKEKGYE IDVPNVETRG RSAKGLKGEK QKATEQNQKK KRLCRGRSAK 360 RLKGQKEKAT EQNQKKNRLC RGCGQLIHHD IRNCPNKRVY TSNVETRGRS AKRLRGENDK 420 ATEQNQKNNR LYGGCGELSH HDIRNCPNKV *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MMSNNEELHS HSSTTTNAAT TPTIVVSPKV APLLTPGGRK ELLSICSNEL KPAIRMKFNN  60
LEEGLEFYKR YAFAAGFNTR KSTTKRQRRS KELKSQYILC NKEGYREKRK PTVEKDLINN  120
EGESNKEKTS IKRKRLVTRI GCKAHIILKH CDDNKFIVSQ IHEGHTHPLY TPSCNLFHKE  180
GRKMNMLHKK IIVNNSKVWK AKRFETIPEQ YMIHRWTTMA LKKPSFDLGG NLLDLAESND  240
EDIQDLVMNL QAIRKDLEAK RFARNNETTG SANNKALDIE LLIGASVPAE VIVKPPKISK  300
NKGTGIHVSN VGTSKEKGYE IDVPNVETRG RSAKGLKGEK QKATEQNQKK KRLCRGRSAK  360
RLKGQKEKAT EQNQKKNRLC RGCGQLIHHD IRNCPNKRVY TSNVETRGRS AKRLRGENDK  420
ATEQNQKNNR LYGGCGELSH HDIRNCPNKV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-09	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	AHYPO_020318-RA