PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020232-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 393aa    MW: 44494 Da    PI: 7.3434
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020232-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.5e-271058250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     +ien++nrqvt+skRrng++KKA+ELS+LCd+++a+++fs++gkl  +s
  AHYPO_020232-RA 10 KIENNTNRQVTYSKRRNGLIKKAYELSILCDIDIALVMFSPSGKLSHFS 58
                     69*******************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.132161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-34160IPR002100Transcription factor, MADS-box
CDDcd002656.15E-34275No hitNo description
SuperFamilySSF554554.32E-28286IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-24323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGRVKLMIRK IENNTNRQVT YSKRRNGLIK KAYELSILCD IDIALVMFSP SGKLSHFSGI  60
KRIEDVLLRY VQLSDQERGT SIHDRQYVIS LLNKLRMEND IALQLAKPTG YNSRIGELQQ  120
KMTNLRIEYE QIENQLRIFK PDPSTFTSGD ILDSTEKTLI ETLSRIAQRK EYLMSSHRSS  180
YDPSAGVNLN PQQYLMSNHL SSYDPSAGIH LNPQQYFMSS HLSSYDPLAG VQVYPQVGVI  240
DPNQAIHSSH EEIPWLTNNI QNPNQNFTSP NPSYTFPMRA SHSSASASTP KTLTHEQDLQ  300
INNQMIETIA SYHQQQEQLI APMRKASHSS ASASTPNILT HEQDQINNQI ISPTIASHHQ  360
QQELMAPMWA SHSSASASTP KTLTHEQDLQ INN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-16175174MEF2 CHIMERA
6byy_B7e-16175174MEF2 CHIMERA
6byy_C7e-16175174MEF2 CHIMERA
6byy_D7e-16175174MEF2 CHIMERA
6bz1_A5e-16175174MEF2 CHIMERA
6bz1_B5e-16175174MEF2 CHIMERA
6bz1_C5e-16175174MEF2 CHIMERA
6bz1_D5e-16175174MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680585.12e-91PREDICTED: agamous-like MADS-box protein AGL104
STRINGXP_010680585.19e-91(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.19e-64AGAMOUS-like 66