PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_020186-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | MYB | ||||||||
Protein Properties | Length: 300aa MW: 32322.9 Da PI: 6.4249 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 9e-11 | 11 | 56 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 W+ e d+ + +a++ ++ + +W+ Ia+ ++ g+tl+++k+++ AHYPO_020186-RA 11 YWSIEQDKAFENAIATHPEElddRWEMIAADVP-GKTLEEVKNHYEL 56 5*****************99*************.***********75 PP | |||||||
2 | Myb_DNA-binding | 24.4 | 7e-08 | 142 | 173 | 16 | 47 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++G+g+W++I+r + +Rt+ q+ s+ qky AHYPO_020186-RA 142 LNKYGKGDWRSISRNFVVTRTPTQVASHAQKY 173 689****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.12 | 4 | 58 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.7E-7 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.01E-10 | 10 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-7 | 11 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.56E-8 | 12 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 12 | 58 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 112 | 174 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.903 | 113 | 178 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.45E-11 | 116 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-11 | 118 | 176 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 0.0011 | 118 | 176 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.13E-7 | 121 | 174 | No hit | No description |
Pfam | PF00249 | 8.8E-6 | 142 | 173 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MAVDENGDSS YWSIEQDKAF ENAIATHPEE LDDRWEMIAA DVPGKTLEEV KNHYELLLED 60 VKQIESGRVP LPTYNSSSEG SSGFAAEEGN GKKGQCSNGV SEANHGSKAL RSDQERRKGI 120 AWTEDEHRQV YYLIFVFVSG LLNKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM 180 NKDRRRSSIH DITSVNTGDL SVPQGPITGQ TNASPAGASS VKSEKQAAQP PTASAGVGVY 240 ANPTIGQPIG GPLVSAVGTP VNLPNHMAYG VQAPIPGSVV SGAPMGMSPM QYPMPHTSVH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-18 | 12 | 77 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010671196.1 | 1e-162 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_010671200.1 | 1e-162 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_010671206.1 | 1e-162 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_010671218.1 | 1e-162 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_010671224.1 | 1e-162 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_019103797.1 | 1e-162 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q9FNN6 | 1e-108 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2N9J7X3 | 1e-154 | A0A2N9J7X3_FAGSY; Uncharacterized protein | ||||
STRING | XP_010671196.1 | 1e-161 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-105 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_020186-RA |
Publications ? help Back to Top | |||
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