PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020132-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 450aa    MW: 47981.9 Da    PI: 7.5763
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020132-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14e-106588427
                     ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                     + C +++rtG+C +G rC+++H++
  AHYPO_020132-RA 65 SDCVYYMRTGFCGFGTRCRYNHPR 88
                     68********************96 PP
2zf-CCCH38.81.6e-12108134127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+++++tGtCk+G +CkF+H++
  AHYPO_020132-RA 108 PGEPVCQYYLKTGTCKFGTTCKFHHPR 134
                      5789*********************96 PP
3zf-CCCH37.34.7e-12155180227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG+Ck+G +CkF+H++
  AHYPO_020132-RA 155 GEKECSYYLKTGQCKFGLTCKFHHPQ 180
                      7899********************97 PP
4zf-CCCH37.53.8e-12310336127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+++++tG Ck+G++Ck++H+p
  AHYPO_020132-RA 310 PGEPECQYYLKTGNCKFGSSCKYHHPP 336
                      5799*********************97 PP
5zf-CCCH39.87.3e-13355380126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t +C f++++G+Ck+G++CkF H+
  AHYPO_020132-RA 355 PGTQPCTFYMQNGYCKFGPTCKFDHP 380
                      689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.9E-56188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.846189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-66390IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-76488IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-56788IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-7107134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.835107135IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-10109134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6111135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5112134IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5153180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812153181IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9155180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6155181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4159179IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7309336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.605309337IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9311336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6314337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5315336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826354382IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-8354381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-7354382IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10355380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-6357379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MELYGRNQGS EVDPSAQWGD TGLEGFCNVV DYYSVDCVWF EHNVESMWRM DVSGRETYPE  60
RLGVSDCVYY MRTGFCGFGT RCRYNHPRDR VAAVAAARLV GGEYPERPGE PVCQYYLKTG  120
TCKFGTTCKF HHPRNAGGSL ANAPLNIHGY PLRPGEKECS YYLKTGQCKF GLTCKFHHPQ  180
PAGMSMPAAA PPFYPTVQSS SVPVPEQAAG SSPSFRVARP PLVPGSYVPG SYGPVLLSPG  240
VMPMAGWGSY SGPVSPALSP GVQPAAAGGS VYGVTPLSPS TPGLAGSYPL LSSAGQSITG  300
VTEHKFPERP GEPECQYYLK TGNCKFGSSC KYHHPPDQGA SAACFLGPLG LPLRPGTQPC  360
TFYMQNGYCK FGPTCKFDHP VGLMKYSPSA SSLPETPAGY LTGSLPHSSS TELLPEYALG  420
SNIQRPSQSS ALLSSTRSTG ADDESHHSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021763079.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-160C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0K9RJK70.0A0A0K9RJK7_SPIOL; Uncharacterized protein
STRINGXP_010684493.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-129C3H family protein