PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019961-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CO-like
Protein Properties Length: 291aa    MW: 31864.7 Da    PI: 7.2214
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019961-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.98.8e-081042436
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                     + C+ +++  ++ fC+ +  +lC +C  + H  
  AHYPO_019961-RA 10 KLCDSCKSATATVFCRADAAYLCISCDAKVHAA 42
                     68*************************999954 PP
2CCT70.73.6e-24223266144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  AHYPO_019961-RA 223 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 266
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.8E-12754IPR000315B-box-type zinc finger
PROSITE profilePS5011910.495754IPR000315B-box-type zinc finger
PfamPF006437.5E-61049IPR000315B-box-type zinc finger
CDDcd000211.94E-81154No hitNo description
PfamPF062034.0E-18223265IPR010402CCT domain
PROSITE profilePS5101716.787223265IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRGLMAAAK LCDSCKSATA TVFCRADAAY LCISCDAKVH AANKLASRHG RVWVCEVCEN  60
APATVTSASW LVLNASKQDD QPKSIDYLFS GGANDGHDHD MDPYLDLDFG VETKPETDLS  120
SDGVVPDPDQ KVHTQMIQHQ PSMFALSTFN PHFNNNHFDG FENPSAACKS FPLSSYTTQP  180
SLSHSMSSSS MDFGVVPDAG AMADVASTGF DKQQQMKMIG MDREARVLRY REKRKNRKFE  240
KTIRYASRKA YAETRPRIKG RFAKRTDVDA PASVDSLFNS DSGYGVVPTF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021755617.11e-122zinc finger protein CONSTANS-LIKE 4-like
TrEMBLA0A0K9RUG61e-120A0A0K9RUG6_SPIOL; Uncharacterized protein
STRINGXP_010692981.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.14e-49CONSTANS-like 2