PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_019891-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 102aa MW: 11671.3 Da PI: 10.1371 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.5 | 1.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLC+a++a+i+fss+g++ye+s+ AHYPO_019891-RA 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEADIALIVFSSRGRVYEFSN 59 79***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.109 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.64E-40 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 7.06E-32 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048283 | Biological Process | indeterminate inflorescence morphogenesis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCE ADIALIVFSS RGRVYEFSNN 60 NNIRSTIERY KKAYTDGENS ATEINAQVKF VITIYSTHQF V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}. | |||||
UniProt | Probable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010683283.1 | 4e-49 | PREDICTED: agamous-like MADS-box protein AGL11 | ||||
Swissprot | A0A217EJJ0 | 9e-45 | AG11S_VITVI; Agamous-like MADS-box protein AGL11 | ||||
Swissprot | F6I457 | 9e-45 | AG11C_VITVI; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A2H5QB37 | 1e-44 | A0A2H5QB37_CITUN; Uncharacterized protein | ||||
STRING | XP_010683283.1 | 2e-48 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.4 | 4e-46 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_019891-RA |