PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_019734-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | RAV | ||||||||
Protein Properties | Length: 238aa MW: 27827.2 Da PI: 9.9571 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35 | 3.6e-11 | 40 | 87 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGV + +grW A+ ++n+ kr+++g+f+ + Aa a++ a +++g AHYPO_019734-RA 40 KYKGVVPQP-NGRWGAQ---LYQNN--KRVWIGTFDCQDLAAYAYDLAVIRFRG 87 89***9888.8******...66664..**********************99998 PP | |||||||
2 | B3 | 68.4 | 9.7e-22 | 157 | 232 | 1 | 73 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkang 73 f+kvltpsdv+k++rlv+pk++ae++ ++ + ++++l +ed + + W++k++y+k+s+ yvltkGW eFvk++g AHYPO_019734-RA 157 FEKVLTPSDVGKLHRLVIPKHYAENYlpKMCEVGGMMLCFEDkLMDKMWRLKYCYWKSSQNYVLTKGWGEFVKDKG 232 99*********************999*9888889********6677****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-17 | 40 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-8 | 40 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.006 | 40 | 95 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.17E-20 | 40 | 96 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-15 | 40 | 96 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-22 | 40 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-6 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-6 | 77 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-26 | 151 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.01E-21 | 155 | 232 | No hit | No description |
SuperFamily | SSF101936 | 4.58E-22 | 156 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-18 | 157 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.348 | 157 | 237 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.9E-5 | 157 | 237 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDWDPYYSSP TISCTSSSSC EPPKIHPIKP INTKKLLPIK YKGVVPQPNG RWGAQLYQNN 60 KRVWIGTFDC QDLAAYAYDL AVIRFRGQQA ITNFPIWKYS NNLHLDFLSS HSKIRVIDML 120 RNQTYQDELV RFKRSRFAKN RARRAAQVAE HEWDRLFEKV LTPSDVGKLH RLVIPKHYAE 180 NYLPKMCEVG GMMLCFEDKL MDKMWRLKYC YWKSSQNYVL TKGWGEFVKD KGGFALI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 8e-26 | 154 | 231 | 11 | 90 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010679708.1 | 1e-93 | PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
Swissprot | Q9ZWM9 | 3e-67 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A078J518 | 7e-68 | A0A078J518_BRANA; BnaCnng37790D protein | ||||
STRING | XP_010679708.1 | 5e-93 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 4e-68 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_019734-RA |
Publications ? help Back to Top | |||
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