PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019201-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 397aa    MW: 45331.9 Da    PI: 4.5353
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019201-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix452.8e-14164248286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      Wt++e+ a ++a  +   rl+r++l  + W ev+k++ r++ +er+  qC++++  l+k+ykk+k++  ++ +++s +++++++++
  AHYPO_019201-RA 164 WTDRETFAFLDAWGDWFLRLGRTSLHSTEWLEVAKQVsRQTNIERTDAQCRNRFCLLRKKYKKEKTRVLSGGNGDS-KWVFYRKMD 248
                      *************************************788899************************999977776.9******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-4125134IPR009057Homeodomain-like
PfamPF138374.9E-19163250No hitNo description
Gene3DG3DSA:1.10.10.602.8E-4189228IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDDKKDGSMF LPKATGLKDQ NEYCSSLYSK VSEFGSMYPR AVNSYPGDEE GNLEDDESGD  60
ENVGINRVRM VEKSTYVDNG ADVEDVNDGD DDDEEEEIDD SDDDDDEEEE DDNDGIDIGR  120
SRKKRKLKTL ISNYEFAPRL PTPSVEKALK SPPSCDGKTS AEDWTDRETF AFLDAWGDWF  180
LRLGRTSLHS TEWLEVAKQV SRQTNIERTD AQCRNRFCLL RKKYKKEKTR VLSGGNGDSK  240
WVFYRKMDML LSSAPSRQIG LSCGIDSGEY VFMNPNVYLN CANGLDEMRD SPENSGSLKG  300
KKDDSDKLRP KENRNMGKIS CFRLLAESIN KFSEIYEKTE SNKSKQMVEL ENMRKDFHRQ  360
LDTQRRQILE RAQAEIARIR QGRDYENDLS GENHSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021731967.11e-144trihelix transcription factor ASIL1-like
RefseqXP_021731968.11e-144trihelix transcription factor ASIL1-like
RefseqXP_021731969.11e-144trihelix transcription factor ASIL1-like
TrEMBLA0A0K9RAI11e-110A0A0K9RAI1_SPIOL; Uncharacterized protein
STRINGXP_010691286.11e-123(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-69Trihelix family protein