PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019032-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 153aa    MW: 17334 Da    PI: 7.7531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019032-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-201970256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr+++ +g+++AeIrdp+++    r +lg+++tae Aa+a+++a+ +l+g+
  AHYPO_019032-RA 19 HYRGVRRRP-WGKFAAEIRDPNKQ--GNRQWLGTYDTAEAAARAYDKAAFELRGH 70
                     7********.**********9554..3899***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-231978IPR016177DNA-binding domain
PfamPF008472.8E-141970IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-311979IPR001471AP2/ERF domain
PROSITE profilePS5103224.5131977IPR001471AP2/ERF domain
CDDcd000183.74E-191978No hitNo description
SMARTSM003804.1E-361983IPR001471AP2/ERF domain
PRINTSPR003673.9E-102031IPR001471AP2/ERF domain
PRINTSPR003673.9E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEGSSRGVNQ HEAGGADVHY RGVRRRPWGK FAAEIRDPNK QGNRQWLGTY DTAEAAARAY  60
DKAAFELRGH LATLNFPNEY YAKLDPLHHQ LHYTRTQMYY GTNTNNNRPG SQLPSNNNRG  120
VGPGTGPRYQ EIIEFPCLDN QILEDMLRQE DN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-27180175Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021725891.15e-49ethylene-responsive transcription factor ERF098-like
TrEMBLA0A0K9QXI65e-46A0A0K9QXI6_SPIOL; Uncharacterized protein
STRINGXP_010671052.13e-46(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-28ERF family protein