PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018951-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 195aa    MW: 22763.1 Da    PI: 6.0289
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018951-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.5e-1517106194
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                      f k+ + +++ + + l++p ++++e+g+++ ++  ++l+ ++ r+W+v+l   k +g+ +l+kGW+   ka gLk+g f++F++d+  sef+  
  AHYPO_018951-RA  17 FYKIVVAPSTQRYK-LRIPEDYVKEYGESQLKKGYIKLRVPDDRVWKVEL--IKEDGQLWLAKGWEVLYKAYGLKQGYFLLFRFDKVvSEFN-- 105
                      55677777777776.***********888888889***************..9*******************************99888884.. PP

                      E CS
               B3  94 v 94 
                      +
  AHYPO_018951-RA 106 I 106
                      4 PP
2B340.54.9e-131151902598
                      TT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
               B3  25 ehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                      e+++++e+++ l l   + +s++v l++ + +s +   ++GW++Fvk n+L++gD++vF+l+  r s +++++++f+
  AHYPO_018951-RA 115 EIEYDEESKQVLLLIGANEKSYNVILRVyDETS-QAEVQAGWRNFVKGNQLNVGDTCVFELIrIRpSVATYKITIFK 190
                      5577788888999999**********7735555.556799********************88434577777777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1811112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-1813112IPR015300DNA-binding pseudobarrel domain
CDDcd100178.43E-1616110No hitNo description
PROSITE profilePS5086311.7316112IPR003340B3 DNA binding domain
SMARTSM010193.0E-1117110IPR003340B3 DNA binding domain
PfamPF023624.6E-1317107IPR003340B3 DNA binding domain
SMARTSM010190.56114192IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-10118190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-10121191IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-10124190No hitNo description
PROSITE profilePS5086310.193126192IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MHLNDSMDNS NDNGTYFYKI VVAPSTQRYK LRIPEDYVKE YGESQLKKGY IKLRVPDDRV  60
WKVELIKEDG QLWLAKGWEV LYKAYGLKQG YFLLFRFDKV VSEFNIFIFD ITCFEIEYDE  120
ESKQVLLLIG ANEKSYNVIL RVYDETSQAE VQAGWRNFVK GNQLNVGDTC VFELIRIRPS  180
VATYKITIFK VANC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724705.11e-38B3 domain-containing protein Os03g0212300-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-16B3 family protein